PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT29611.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 446aa MW: 49679.7 Da PI: 5.3923

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT29611.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.7	9.7e-06	117	137	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk Fs+ L H+rtH PHT29611.1 117 CKECGKEFSSLKALAGHLRTH 137 ********************9 PP
2	zf-C2H2	15	7.1e-05	146	168	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F + L H+++H PHT29611.1 146 HICEKCGKGFVSMRALFGHMKVH 168 68*******************99 PP
3	zf-C2H2	11.6	0.00087	364	386	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kCp C k+F++ +L H r H PHT29611.1 364 HKCPVCFKVFPSGQSLGGHKRAH 386 79**************9999988 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MEETQEQKYI CKFCNKCCDS GKSLGGHMRG HLALISAAKK QKDSSKMGSE EEEAANIHED 60 LSISEQSESS TSLEKENNIS IGDDGDDSIG YGLRENPRRS WRVSDFKNCS LEMKNLCKEC 120 GKEFSSLKAL AGHLRTHSKK GIEKCHICEK CGKGFVSMRA LFGHMKVHSK RSTGDDQDSE 180 LSKQSLSDFD NICPIRKKRS KIKYKIDVNS SFSGLNESSS AISEVDEVEE AARCLLMLSV 240 GVRDWDEYIS ILESSKDENV NLESEPSFHC AKGISAADAF TVKHLSHAVF SDSGCVDDYE 300 KNYEIAEFSD ELMLVNTEIT KVCYSTDMQF ENDPSSSVVM EEFPFLNSCS LKNAEVEPVK 360 SKKHKCPVCF KVFPSGQSLG GHKRAHYTGF TESKTKEPMV KKLDDLADNH KAFDLNTPVN 420 AVDVGENDVE LKLWWVGSSD GLMMSN

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MEETQEQKYI CKFCNKCCDS GKSLGGHMRG HLALISAAKK QKDSSKMGSE EEEAANIHED  60
LSISEQSESS TSLEKENNIS IGDDGDDSIG YGLRENPRRS WRVSDFKNCS LEMKNLCKEC  120
GKEFSSLKAL AGHLRTHSKK GIEKCHICEK CGKGFVSMRA LFGHMKVHSK RSTGDDQDSE  180
LSKQSLSDFD NICPIRKKRS KIKYKIDVNS SFSGLNESSS AISEVDEVEE AARCLLMLSV  240
GVRDWDEYIS ILESSKDENV NLESEPSFHC AKGISAADAF TVKHLSHAVF SDSGCVDDYE  300
KNYEIAEFSD ELMLVNTEIT KVCYSTDMQF ENDPSSSVVM EEFPFLNSCS LKNAEVEPVK  360
SKKHKCPVCF KVFPSGQSLG GHKRAHYTGF TESKTKEPMV KKLDDLADNH KAFDLNTPVN  420
AVDVGENDVE LKLWWVGSSD GLMMSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	1e-14	C2H2 family protein