PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT29586.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

WRKY

Protein Properties

Length: 379aa MW: 42161 Da PI: 8.1078

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT29586.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.2	9.6e-30	135	190	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 DgynWrKYGqK+vk +e+prsYY+Ct+ +Cp+kkkve+s d++++eitY+g+Hnh PHT29586.1 135 DGYNWRKYGQKKVKATECPRSYYKCTHLKCPAKKKVEKSV-DGHITEITYNGRHNHA 190 9*************************************.*************6 PP
2	WRKY	106.2	1.7e-33	302	360	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vkg+++prsYYrCt+agC+v+k+ver+++dpk+v++tYeg+Hnh+ PHT29586.1 302 LDDGYRWRKYGQKAVKGTQHPRSYYRCTYAGCNVRKQVERASTDPKAVITTYEGKHNHD 360 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MDLALAQSPL FMIPSGFSPS GFLNSPGFLS PLQSPFGMSH QQALAHVTAQ AECSSSYMQM 60 QAEDQCSAQV ASAEAALGNE LLTDPKESSL QIKECLQSRL DKKPSDKQGK QFELTEVPQF 120 ENKTSFGAFD KSACDGYNWR KYGQKKVKAT ECPRSYYKCT HLKCPAKKKV EKSVDGHITE 180 ITYNGRHNHA RPTKQRKDGS ALDSTDSSGV QPDISTHDWT VMNSSDGSSP SHSEQVPNQM 240 ASELLVKKEC DETKSNLIEV DEGHDEPDAK RTKMAVDTLA SSHGTVAESK IILQTRSEVD 300 ILDDGYRWRK YGQKAVKGTQ HPRSYYRCTY AGCNVRKQVE RASTDPKAVI TTYEGKHNHD 360 IPTVIRNRGT RNTAKDTWR

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MDLALAQSPL FMIPSGFSPS GFLNSPGFLS PLQSPFGMSH QQALAHVTAQ AECSSSYMQM  60
QAEDQCSAQV ASAEAALGNE LLTDPKESSL QIKECLQSRL DKKPSDKQGK QFELTEVPQF  120
ENKTSFGAFD KSACDGYNWR KYGQKKVKAT ECPRSYYKCT HLKCPAKKKV EKSVDGHITE  180
ITYNGRHNHA RPTKQRKDGS ALDSTDSSGV QPDISTHDWT VMNSSDGSSP SHSEQVPNQM  240
ASELLVKKEC DETKSNLIEV DEGHDEPDAK RTKMAVDTLA SSHGTVAESK IILQTRSEVD  300
ILDDGYRWRK YGQKAVKGTQ HPRSYYRCTY AGCNVRKQVE RASTDPKAVI TTYEGKHNHD  360
IPTVIRNRGT RNTAKDTWR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03340.1	1e-100	WRKY family protein