PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT29374.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 138aa MW: 15844 Da PI: 9.0876

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT29374.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	46.8	3.7e-15	21	70	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyey 49 k+i n+ nr+vtfsk r ++K A+EL++L +ae+ ++i s + + l+++ PHT29374.1 21 KPIYNQNNRHVTFSKHRLDLFKRASELCILAGAEIVILIQSLKpQSLFTF 70 6899***********************************99542566666 PP

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence
MNVNTNTTVK KTQGRRKIAI KPIYNQNNRH VTFSKHRLDL FKRASELCIL AGAEIVILIQ 60 SLKPQSLFTF GHPNADAVID CYLTGKYSSS LSSSSTDKFN LQQNNQYYSQ MCKDLEAEEK 120 KENYEDVKMV NIDNNLYL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	1e-19	M-type_MADS family protein