PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PHT29373.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 201aa MW: 22957.2 Da PI: 10.1072 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.8 | 3.8e-20 | 20 | 69 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49 k+i+n+ r+vtfskRr g++KKA EL++L+++e+ +++ s ++++l+++ PHT29373.1 20 KPIDNQNSRHVTFSKRRSGLFKKATELCILTGVEIVILVQSlKRQRLFTF 69 78*************************************99567889888 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 201 aa Download sequence |
MNVNTNTVKK TQGRRKIAIK PIDNQNSRHV TFSKRRSGLF KKATELCILT GVEIVILVQS 60 LKRQRLFTFG HPSADAVIDR YLTGKSSSSL SSSTTDEFNL QKNNQYFSQV CKDLEAEKKK 120 KENIEEAKMV NIDSNNSDNV GCWWYEPIET KDIDELEQFM VALEKLKKNV TTRADELSLL 180 NGSSSLNLTM KRARFGLRIN F |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-28 | M-type_MADS family protein |