PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PHT29368.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 195aa MW: 21817.4 Da PI: 10.1088 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.1 | 1.5e-20 | 46 | 93 | 3 | 48 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklye 48 i+n+sn qvtfskR + ++KKA+EL++LC++e+a+++fs+ +k+y PHT29368.1 46 IKNESNMQVTFSKRGASLFKKASELCTLCGTEIAIVVFSPgkANKVYS 93 9*************************************9722456665 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 195 aa Download sequence |
MGISNIKALG VGIKNHIFLV SQILSSVNLA MPRMSKGRKK VEIVEIKNES NMQVTFSKRG 60 ASLFKKASEL CTLCGTEIAI VVFSPGKANK VYSFGHPLME LLVDTFLGRD LPPPNDDDRH 120 NHLIRTHRNT GQRGLNKEVM DMQESLHKEK AIGKSLLESG RGAYDRMCES PIIEGHRLSQ 180 LEQLKEPLEA QKRKV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-37 | M-type_MADS family protein |