PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PHT29364.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 267aa MW: 29225.3 Da PI: 9.6667 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.1 | 4.2e-22 | 16 | 63 | 3 | 48 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklye 48 +n+sn qvtfskRr+g++KKA+EL++LC+ae+a+++fs+ +k+y PHT29364.1 16 MKNESNMQVTFSKRRAGLFKKASELCTLCGAEIAIVVFSPgkANKVYS 63 58************************************9722456665 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 267 aa Download sequence |
MARLSKGRKK VEIVKMKNES NMQVTFSKRR AGLFKKASEL CTLCGAEIAI VVFSPGKANK 60 VYSFGHPSLE LLVDTFLGRD LPPPNDDDRH NHLIRAHRNT GQRGLNKEVM DMQESLRKEK 120 AIGKSLLESG REAYDRVCES PIIEGLSQSQ LEQLKKALES QKRKVEFEAE LQQMGSDAPL 180 PFLTFGSALS PTSGDGASSS HGPNGQVKFN TDGSYFDHNG KAGIGGLARD SVGSFPFALV 240 LPIQCRDHNA AEAMAAHFAV KWLKARG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-43 | M-type_MADS family protein |