PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT29357.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 177aa    MW: 19457.1 Da    PI: 7.5088
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT29357.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.14.1e-221756443
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                +n+sn qvtfskRr+g++KKA+EL++LC+ae+a+++fs+ 
  PHT29357.1 17 KNDSNMQVTFSKRRAGLFKKASELCTLCGAEIAIVVFSPG 56
                8************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    
MQRMSKGRKK VEIVEMKNDS NMQVTFSKRR AGLFKKASEL CTLCGAEIAI VVFSPGKANK  60
VYSCGHPSVE LMVDTFLGRD LPPPNDDDFH NRLIRAHRNT GQRGLNEEVM DMQESLQKEK  120
AEALESQKRK VEFEAELQQM GSDAPIPFLT FGSALSPTGG DGASSSYGPN VGAHIPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-38M-type_MADS family protein