PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT29014.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

ERF

Protein Properties

Length: 536aa MW: 59231.4 Da PI: 8.4072

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT29014.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	32.5	2.2e-10	191	231	6	50
AP2 6 VrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaar 50 Vr +k +g+++ eIrd + r kr++lg+f taeeA + + + PHT29014.1 191 VRKRK-SGKFATEIRDpF-----RkKRIWLGTFNTAEEASEVYQSKK 231 89888.7*******76.....45************99886655 PP

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence
MKSPAKQDFI EGNQEEDFIQ RKIRVKILDP DATESSSDDD EQQEKRPKYI VHEIIQEKVK 60 IQSFSINNGT PFDFYQFSGK LSPMVRKRKC GKLGTEEKLK VAIFAKSENG SSGDLPLMAD 120 SQTSDSLKNK KFTTEYEEKL KLAKNAKVKR AISAKSEIGS SSSEVKIQSL SLINRKSLSF 180 DQVSGKLPPM VRKRKSGKFA TEIRDPFRKK RIWLGTFNTA EEASEVYQSK KLEFQEKLNK 240 AKNANKKKAI SGKCELGLSS SDPPLMADAQ TSDSSNELGD QFNKAKNAKE KKAISAKLGL 300 GSSSDPPLMM DSQTSDTLKE FVEQLKKAKS AKVQKAISAK FGLGCSSGDP PLMVHSLNSD 360 TSNLFDDRSK NTVNAKEEKA ISAKFGLEFC YSDSQTSDSS NELDDRSKKA ENAIVKKAIS 420 TKFGLEFCSS DTQTSDSSNE LDDRSKNAEN AIVKEAISAK FELGNSSSDP SSTVDSQTSD 480 SSNDQESEEE LWMGQWIRIS GDKEVKFSQK LGVPVVDNYG FLLGEFSKLD DLSISL

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence

MKSPAKQDFI EGNQEEDFIQ RKIRVKILDP DATESSSDDD EQQEKRPKYI VHEIIQEKVK  60
IQSFSINNGT PFDFYQFSGK LSPMVRKRKC GKLGTEEKLK VAIFAKSENG SSGDLPLMAD  120
SQTSDSLKNK KFTTEYEEKL KLAKNAKVKR AISAKSEIGS SSSEVKIQSL SLINRKSLSF  180
DQVSGKLPPM VRKRKSGKFA TEIRDPFRKK RIWLGTFNTA EEASEVYQSK KLEFQEKLNK  240
AKNANKKKAI SGKCELGLSS SDPPLMADAQ TSDSSNELGD QFNKAKNAKE KKAISAKLGL  300
GSSSDPPLMM DSQTSDTLKE FVEQLKKAKS AKVQKAISAK FGLGCSSGDP PLMVHSLNSD  360
TSNLFDDRSK NTVNAKEEKA ISAKFGLEFC YSDSQTSDSS NELDDRSKKA ENAIVKKAIS  420
TKFGLEFCSS DTQTSDSSNE LDDRSKNAEN AIVKEAISAK FELGNSSSDP SSTVDSQTSD  480
SSNDQESEEE LWMGQWIRIS GDKEVKFSQK LGVPVVDNYG FLLGEFSKLD DLSISL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	192	211	RKRKSGKFATEIRDPFRKKR
2	193	212	RKRKSGKFATEIRDPFRKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68550.1	4e-14	ERF family protein