PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT28863.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 424aa MW: 48004 Da PI: 9.0312

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT28863.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.6	1.1e-05	54	76	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++C++ F r nL+ H r+H PHT28863.1 54 YICEICNQGFQRDQNLQMHRRRH 76 89********************9 PP
2	zf-C2H2	16.2	2.9e-05	131	153	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ PHT28863.1 131 WVCQKCNKGYAVQSDYKAHLKTC 153 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MLNSSSTDPL MTSIENGNNC NNTNKRKRGP AGTPDPDAEV VSLSPKTLLE SDRYICEICN 60 QGFQRDQNLQ MHRRRHKVPW KLLKRETPIV KKRVFVCPEP TCLHHDPCHA LGDLVGIKKH 120 FRRKHSNHKQ WVCQKCNKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDACS 180 FGMLRSESQS LQLPTSAPCL SRTASSPSPS SDHTNNLINT TVLPWPHFLM NTTPNSIIKK 240 HNLELQLLTT TTTTTSPSSP LDVSISSKSR DDHSTHNNNL QLSIGSSDIL NDSENNNNDT 300 HRSRNGPDEL SRGWLRQAVA EKAYAEEARK EAKREIELAE QELANARRIR KQAQVELEKA 360 QALKEEAIRQ INFTLSQITC HVCKQQFQAK RIVTTTSIVP KSYQVERRNI DHDQSSHLKY 420 SCPT

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MLNSSSTDPL MTSIENGNNC NNTNKRKRGP AGTPDPDAEV VSLSPKTLLE SDRYICEICN  60
QGFQRDQNLQ MHRRRHKVPW KLLKRETPIV KKRVFVCPEP TCLHHDPCHA LGDLVGIKKH  120
FRRKHSNHKQ WVCQKCNKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDACS  180
FGMLRSESQS LQLPTSAPCL SRTASSPSPS SDHTNNLINT TVLPWPHFLM NTTPNSIIKK  240
HNLELQLLTT TTTTTSPSSP LDVSISSKSR DDHSTHNNNL QLSIGSSDIL NDSENNNNDT  300
HRSRNGPDEL SRGWLRQAVA EKAYAEEARK EAKREIELAE QELANARRIR KQAQVELEKA  360
QALKEEAIRQ INFTLSQITC HVCKQQFQAK RIVTTTSIVP KSYQVERRNI DHDQSSHLKY  420
SCPT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-109	C2H2 family protein