PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT28557.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 316aa    MW: 36671.2 Da    PI: 7.0555
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT28557.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W+++Ede+l+++++++G g+W+++++  g+ R++k+c++rw +yl
       PHT28557.1 14 RGLWSPDEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding50.16.2e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++ eE++ ++ +++ lG++ W+ Ia++++ gRt++++k++w++yl
       PHT28557.1  67 RGTFSLEEEDMIITLHEVLGNR-WAQIAAKLP-GRTDNEIKNYWNSYL 112
                      899*******************.*********.*************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MGRHSVYVKE KLRRGLWSPD EDEKLYNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SLEEEDMIIT LHEVLGNRWA QIAAKLPGRT DNEIKNYWNS YLKKKLIKQG  120
IDPNTHKPLS ENHQVRNDTN CTDKASILLM SKFPNMSNSV EIEQPFHFNK RIFNSEAITR  180
QLTEVSRNQL VSKQVFDPLF LYDFQANMNP IGPYDGNQDF GICSMPNLTN FEHGHMTESD  240
FSDSSTSRMS TRNRTNTMIR HHSSAGIHQM NEMLENSQEL TWDADNKIDS LFEYPYDGIK  300
NEEDFSNNNN PLSSLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G57560.13e-75MYB family protein