PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT28080.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Protein Properties

Length: 284aa MW: 31617.8 Da PI: 10.2512

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT28080.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.9	1.6e-17	83	160	16	99
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 l +pkkfa++ ++ + ++l+ sg +W+v+l + +++ +l++GWkeFv a+ L+e D ++Fk++g+s+f v+vf++ PHT28080.1 83 LAIPKKFANNLR--EKLGDSVSLTGHSGATWNVRL--TLIGDTLFLKDGWKEFVGAHSLEEDDLLIFKYNGSSRF--DVSVFDR 160 78****5444..457779***********..888899************************998999..9999997 PP

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence
MWIVCGKLLS IASVRQLERY CVSRESDRAS NGGTGGTSGG TKKLRGRWRL RRLLMRSLWG 60 AGITRRDCIR FTLLRLHLVE IYLAIPKKFA NNLREKLGDS VSLTGHSGAT WNVRLTLIGD 120 TLFLKDGWKE FVGAHSLEED DLLIFKYNGS SRFDVSVFDR QSLCEKEASC FVKKCEHADV 180 ASRSRTKRHT PREYSSRDVS EAPPTKKPKL AATPTSEDTS KSSSHDEYEP PAKKKTLAST 240 STSADTNESS SHNECEPPTE KKTTLASTST SRTRSARANA KLLS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	183	188	RSRTKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	1e-25	B3 family protein