PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT28036.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 133aa MW: 15004.3 Da PI: 10.8118 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.7 | 2e-20 | 16 | 64 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklyey 49 +n+sn qvt+skRr+g++KKA+EL +LC+ae+a+++fs+ +k+y + PHT28036.1 16 MKNESNMQVTLSKRRAGLFKKASELYTLCGAEIAIVVFSPgkANKVYSF 64 58************************************97224666655 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence |
MARLSKGRKK VEIVKMKNES NMQVTLSKRR AGLFKKASEL YTLCGAEIAI VVFSPGKANK 60 VYSFGQPSVE LLVDRFLGRD LPPRNDDDRQ NHLIRAHRNT GQRGLNKEFM DMQESFHKEK 120 AVGKSLLESG RGA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-37 | M-type_MADS family protein |