PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT25860.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 241aa    MW: 27480.4 Da    PI: 9.2408
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT25860.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.34.1e-181051243
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                +i n+s r+ tf kR++g++KK +ELS+LC+++++ ii+s+ 
  PHT25860.1 10 FITNDSARKATFKKRKKGLMKKVSELSTLCGIDACAIIYSPY 51
                89**************************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MTRKKVKLAF ITNDSARKAT FKKRKKGLMK KVSELSTLCG IDACAIIYSP YDNSPEVWPN  60
TMGAQRVLAE FKRMPEMEQG KKMMNQESFL RQRIAKANEQ LKKQSKENRE KEMTEIMYQG  120
LTGKGLQHLN LGDLNDLGWV IDQNLKEIYK RIEAVKKGAL TSYTAAAAKS HAVVAPPVEQ  180
EPAVVELGLD GMQRTQAEWF TNWMNSNTSD QQIDFGHGDE MILPNYNDNH SANMWPNDFY  240
P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAFITNDSARKATFKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-66M-type_MADS family protein