PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT24984.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRAS

Protein Properties

Length: 272aa MW: 30889.1 Da PI: 6.7768

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT24984.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	127.3	1.7e-39	16	146	7	140
GRAS 7 ecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIlea 105 + +++++++ l a++l+++l + g+pmqRl ay++e+L arl++s+ ++y++l+++e + s+e ++++ l++e++P++kf++l aN aI +a PHT24984.1 16 AYVKVIAENTLITAKWLMSELCIVVFICGSPMQRLGAYMLEGLVARLTSSGRSIYNSLRCKEPT---SVELFSYMPLLYEICPYFKFGYLSANGAITDA 111 56789999999**************************************************9...9*************************** PP GRAS 106 vegeervHiiDfdisqGlQWpaLlqaLasRpegpp 140 +++e+ +HiiDf++ q+ QW++L++aLa+Rp+gp+ PHT24984.1 112 MKNENSIHIIDFQVAQCSQWITLIHALAARPGGPH 146 *****************************9986 PP
2	GRAS	108.7	8.2e-34	158	263	212	319
GRAS 212 rlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhe 310 +l e++ l+ d +L++vkslsPk+v++v qe+++n+ +F+ fle+l+yy ++f+s+++ lpr+++eri+vE+++l+reiv+++acegaer+e h+ PHT24984.1 158 QLTPEEGGLK--LDGLLRMVKSLSPKIVTLVKQESNTNTVQFFPSFLETLNYYLSVFESIDVALPRNHKERINVEQHCLAREIVDILACEGAERVEHHK 254 4444444444..499********************************************************************************** PP GRAS 311 tlekWrerl 319 le+W++ + PHT24984.1 255 LLERWSHDF 263 ***9765 PP

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence
MMEMMPRGDL KEVPIAYVKV IAENTLITAK WLMSELCIVV FICGSPMQRL GAYMLEGLVA 60 RLTSSGRSIY NSLRCKEPTS VELFSYMPLL YEICPYFKFG YLSANGAITD AMKNENSIHI 120 IDFQVAQCSQ WITLIHALAA RPGGPHESAS RRLMISHQLT PEEGGLKLDG LLRMVKSLSP 180 KIVTLVKQES NTNTVQFFPS FLETLNYYLS VFESIDVALP RNHKERINVE QHCLAREIVD 240 ILACEGAERV EHHKLLERWS HDFLWPVLNP IC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.1	1e-100	GRAS family protein