PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT24684.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 177aa    MW: 20317.9 Da    PI: 6.5645
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT24684.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.72.7e-121564149
                S---SHHHHHHHHHHHHHHHHHHHHHHH.HHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELS.vLCdaevaviifsstgklyey 49
                ++ien++ r vtfskR+ g+ KKA+ L     d++v +i +s++gk y +
  PHT24684.1 15 EKIENETTRLVTFSKRKSGLYKKASKLVeKYEDVDVGIISYSPNGKPYSF 64
                57************************973478*************98887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    
MSGRKYLGRR KIPIEKIENE TTRLVTFSKR KSGLYKKASK LVEKYEDVDV GIISYSPNGK  60
PYSFFHPTFD SVVGRFVSPD TQPSEDGRFF DTNARIKVKE RRGELDKLDV IEKIISNQAP  120
DANDMENVWE YIDNVKEEDV TRLEEWLDLV DLKLNHKLRM LENGASSSTQ APPNGGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-20M-type_MADS family protein