PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP045086.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 240aa    MW: 27389.4 Da    PI: 9.972
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP045086.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.65e-161152344
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                 i+n++ r+ tf kR++g +KK +E+ +LCd+e++ +++++++
  PCP045086.1 11 IQNHTTRKLTFKKRKKGFMKKMSEITTLCDVEACAVVYGQND 52
                 99*************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MSRKKVKLAY IQNHTTRKLT FKKRKKGFMK KMSEITTLCD VEACAVVYGQ NDTQPEVWPS  60
PSGVQGTYAK FRTMPSMEQT KKQLNMETFL RQRIDKAKDQ LRKQKKENRE KEMSILMSQC  120
LTGRSLHDLN VGDLNDLGWV VDHKVEEINR KVKKVNDELT WNGSNQVQLV PAPPPPPAIS  180
GGTMNMQQTQ SQAAPMEMMT LQDQQLQQQM AAIGANTGDD FLPFGNQNHQ ALWSNTPYYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAYIQNHTTRKLTFKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-46M-type_MADS family protein