PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP044936.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 339aa    MW: 37175 Da    PI: 9.252
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP044936.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.23.8e-1384128147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT +E++++++a +++  + Wk+I + +g  +t  q++s+ qky
      PCP044936.1  84 RESWTDQEHDKFLEALQLFDRD-WKKIESFVG-SKTVIQIRSHAQKY 128
                      789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MVSVNPNPPQ GFYLFDPMNT NMGLPGLSSM PPPPPPTTGA ASATAATSTT AACTPSSAAA  60
NAASMSADDQ SKKIRKPYTI TKSRESWTDQ EHDKFLEALQ LFDRDWKKIE SFVGSKTVIQ  120
IRSHAQKYFL KVQKKGTSEH VPPPRPKRKA THPYPQKAPK SAAVVSQVAG PFQSSSDSLE  180
HGYVYQPDSS FVLGTPVNAA TLSSWSCNSG PPVNMSQTKD EGRLSGPTVT HNSCYSSSNE  240
SNPINWKMRE TVDGVGPGQP QRVLLVLTIV PVYAVLPDFA QVYKFIGSVF DPSTTNHMER  300
LRQLDPINLE TAFLLMRNLS INLTRPEFED HVSIHRLNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-90MYB_related family protein