PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP044728.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 951aa MW: 103486 Da PI: 5.8839

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP044728.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.5	3.2e-10	74	120	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr l+P +K++Ka+ L ++ +k+L PCP044728.1 74 KNHSEAERRRRERINAHLSTLRGLVPCT-----EKMDKAALLAAVISQVKEL 120 58***********************8.....7******9999887777 PP

Sequence ? help Back to Top
Protein Sequence Length: 951 aa Download sequence
MDFYGFNSKS SFNPSLFDPF KHGASGFGGA LQGGAAVALP HSLVLDSEKG ELVKAPARVG 60 KKGVSEAKAL AALKNHSEAE RRRRERINAH LSTLRGLVPC TEKMDKAALL AAVISQVKEL 120 KKDALESSKG FLIPVDDDEV KVEPYVNGAG DGTISVKASV CCEYRSELLS DLREALDSLH 180 LKMVKAEIAT LGNRVKNVFV LTSFKKDSND ANTEAYELLA SSVHQVLSSV LDKASPSPEY 240 SPRTTLPSKR RRLSYFDKID TSSSSSKIME GGSGKSILQF APFQSSVDEG FWHRLSSLKL 300 NKFGVDDSPV PITGFYAPYS QSQVSNHLTL LAESLPSDSS EESSLLAVSR GNRNRCFVPG 360 IIYNTNTVEG FHALDKQGLL KAEAQKIWED ICSGKALEDS SVLSRFLLIS FADLKKWSFH 420 YWFAFPALVL DPPATLVNLR PASQCFSSEE AESVSAAFNE WRNSSLTADV PFFLVHIDSN 480 SHATIKHLKD WETSQSADDG HKLLFGFYDP CHLPNHPGWP LRNLLAFVCS RWDLKSVHFL 540 CYRESRGFAD LGLSLVGEAM ITIPPGSAAE IGLAISAADL NLKLMRWRAL PSLNLHSLSS 600 LKCLLLGAGT LGCQVARTLM AWGVRNITLV DNGRVAMSNP LRQSLYTLDD CLNGGEYKAT 660 AAVNSLKRIF PAVEAEGVIM AIPMPGHPVP SQEEQSVLDD CRRLHDLIDS HDVVLLLTDT 720 RESRWLPSLL CANTNKITIT AALGFDSFLV MRHGAGPCSS SHDSKTEAEN SLSADMSNLG 780 LTDGDGGKRL GCYFCNDVVA PIDSTSNRTL DQQCTVTRPG LAPIASALAV ELLVGILHHP 840 HGIFAEGEVV NSSNSGSSEQ PLGILPHQIR GSLAQFSQMT LVGHSSDSCT ACCGTVVSEY 900 RKRGMEFILQ AINYPTYLED LTGLTELMKS ASKFELEWDD GTDEDDDDLV E

Sequence ? help Back to Top

Protein Sequence Length: 951 aa Download sequence

MDFYGFNSKS SFNPSLFDPF KHGASGFGGA LQGGAAVALP HSLVLDSEKG ELVKAPARVG  60
KKGVSEAKAL AALKNHSEAE RRRRERINAH LSTLRGLVPC TEKMDKAALL AAVISQVKEL  120
KKDALESSKG FLIPVDDDEV KVEPYVNGAG DGTISVKASV CCEYRSELLS DLREALDSLH  180
LKMVKAEIAT LGNRVKNVFV LTSFKKDSND ANTEAYELLA SSVHQVLSSV LDKASPSPEY  240
SPRTTLPSKR RRLSYFDKID TSSSSSKIME GGSGKSILQF APFQSSVDEG FWHRLSSLKL  300
NKFGVDDSPV PITGFYAPYS QSQVSNHLTL LAESLPSDSS EESSLLAVSR GNRNRCFVPG  360
IIYNTNTVEG FHALDKQGLL KAEAQKIWED ICSGKALEDS SVLSRFLLIS FADLKKWSFH  420
YWFAFPALVL DPPATLVNLR PASQCFSSEE AESVSAAFNE WRNSSLTADV PFFLVHIDSN  480
SHATIKHLKD WETSQSADDG HKLLFGFYDP CHLPNHPGWP LRNLLAFVCS RWDLKSVHFL  540
CYRESRGFAD LGLSLVGEAM ITIPPGSAAE IGLAISAADL NLKLMRWRAL PSLNLHSLSS  600
LKCLLLGAGT LGCQVARTLM AWGVRNITLV DNGRVAMSNP LRQSLYTLDD CLNGGEYKAT  660
AAVNSLKRIF PAVEAEGVIM AIPMPGHPVP SQEEQSVLDD CRRLHDLIDS HDVVLLLTDT  720
RESRWLPSLL CANTNKITIT AALGFDSFLV MRHGAGPCSS SHDSKTEAEN SLSADMSNLG  780
LTDGDGGKRL GCYFCNDVVA PIDSTSNRTL DQQCTVTRPG LAPIASALAV ELLVGILHHP  840
HGIFAEGEVV NSSNSGSSEQ PLGILPHQIR GSLAQFSQMT LVGHSSDSCT ACCGTVVSEY  900
RKRGMEFILQ AINYPTYLED LTGLTELMKS ASKFELEWDD GTDEDDDDLV E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	85	ERRRRE
2	249	253	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41130.1	7e-33	bHLH family protein