PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP044206.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 317aa MW: 35888.1 Da PI: 6.8311

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP044206.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	47.2	3.5e-15	240	264	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ + +tGtC+yG++C+FaHg PCP044206.1 240 KTELCNKWEETGTCPYGENCQFAHG 264 9***********************9 PP
2	zf-CCCH	26.2	1.4e-08	277	302	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt lCr +++G C+yG rC+F H+ PCP044206.1 277 YKTQLCRMVLAGGACPYGHRCHFRHS 302 9**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence
METNTNTAFP NSPDSSREFG DDFDPMYRSL FPPKYTLPSS LSLTPSTRST SFSDSDSDDH 60 HHHSTTSHNL NQAQLVLEYQ ELRDHYDLCN SHLRNLTKEL DSLRRENAQL RSANTDLVKL 120 LSSQAAFQSC LLSSSSSSAF QSPMAASFLD DFRRLGFGYL SPHDGVISEE SSDISPTSVI 180 ERNRLVDTDR ISLPKSISVR SSTRPQVPNQ LVSRPVTWMM LAFAQVQQSE MKVFNQGMLK 240 TELCNKWEET GTCPYGENCQ FAHGVRELRP VLRHPRYKTQ LCRMVLAGGA CPYGHRCHFR 300 HSLTEQEKLQ LAISESF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	1e-58	C3H family protein