PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP044137.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

M-type_MADS

Protein Properties

Length: 832aa MW: 94391 Da PI: 6.8475

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP044137.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	71.1	9.5e-23	453	496	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + e++ nrqvtfskRrngilKKA+ELS+LCd+++ +++fs+tg+ PCP044137.1 453 KLESSGNRQVTFSKRRNGILKKAKELSILCDVDIVLLMFSPTGR 496 67999*************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 832 aa Download sequence
MEKAMNEGIG CSLVSLVALL LVLIILNWLI LLHFQSNLRY LFLCFRCEVM QVKTVCQRSC 60 TDEKVCDHKP SKGVETNSTT SSDQLKKCSV SFSVCDFCFC GCVLMDRMVS LTIPQGRNFG 120 LPFMNLVRLK GIPILQQLHL EEQLLRTSSD NWCIINDGTD DPAIVMGVSG KHVDDVVVIC 180 PRYECHAWSI VDLFSKLHDS GYAHSLRFVI LLFIYLLFCI GDCKGSVCVL HRKPAELLEI 240 DLVLQDQIPV IRRFTGGGTV TVDQNTLFVT FLCNKDAVPG LQPYPRPIMS WSSLVYSKVF 300 EGLADFQLRE NDYVFGNRKF GGNAQSISKN RWIHHTSFLW DYEVRNMAYL KHPKRVPEYR 360 LARDHLEFIC RMKDYIPRSV FLEKTVEALG TQFSVRPEQS DTIEATSNTK FVPSTRLLTR 420 QELEEAAAFD SQAERNLTQS LSLMGRVKLK IKKLESSGNR QVTFSKRRNG ILKKAKELSI 480 LCDVDIVLLM FSPTGRPTLF QGERSNIEEI ISKFAQLTPQ ERAKRKLESL EVLKKTFKKL 540 DHDVNVQDFM SSRYVIDLTH QVMVLQAQLT ELHRRLSLWS DPDKVDNLEQ LRQMEDILKE 600 SINRTRLHKE NLGKHQLTSL DCTNQLDFCV SKFQNGMPSS FLVGGSQEAQ HITWLFNGDN 660 QHMILPNEQN YLPHRGVECS TNSTVPQYTN YFGTGTSTSS STGKQSEAGD PLQLDTMGQI 720 SNMEGGGGFN EFDINACLST ESGEHYAYPT YCSSNVPDDK KVKPENEMNI PANPVDYQLS 780 SNFELPRSLY ENDHHAWLSS PGPSGIAVYK ENTYQPVSIP SIDVFHSVFA SL

Sequence ? help Back to Top

Protein Sequence Length: 832 aa Download sequence

MEKAMNEGIG CSLVSLVALL LVLIILNWLI LLHFQSNLRY LFLCFRCEVM QVKTVCQRSC  60
TDEKVCDHKP SKGVETNSTT SSDQLKKCSV SFSVCDFCFC GCVLMDRMVS LTIPQGRNFG  120
LPFMNLVRLK GIPILQQLHL EEQLLRTSSD NWCIINDGTD DPAIVMGVSG KHVDDVVVIC  180
PRYECHAWSI VDLFSKLHDS GYAHSLRFVI LLFIYLLFCI GDCKGSVCVL HRKPAELLEI  240
DLVLQDQIPV IRRFTGGGTV TVDQNTLFVT FLCNKDAVPG LQPYPRPIMS WSSLVYSKVF  300
EGLADFQLRE NDYVFGNRKF GGNAQSISKN RWIHHTSFLW DYEVRNMAYL KHPKRVPEYR  360
LARDHLEFIC RMKDYIPRSV FLEKTVEALG TQFSVRPEQS DTIEATSNTK FVPSTRLLTR  420
QELEEAAAFD SQAERNLTQS LSLMGRVKLK IKKLESSGNR QVTFSKRRNG ILKKAKELSI  480
LCDVDIVLLM FSPTGRPTLF QGERSNIEEI ISKFAQLTPQ ERAKRKLESL EVLKKTFKKL  540
DHDVNVQDFM SSRYVIDLTH QVMVLQAQLT ELHRRLSLWS DPDKVDNLEQ LRQMEDILKE  600
SINRTRLHKE NLGKHQLTSL DCTNQLDFCV SKFQNGMPSS FLVGGSQEAQ HITWLFNGDN  660
QHMILPNEQN YLPHRGVECS TNSTVPQYTN YFGTGTSTSS STGKQSEAGD PLQLDTMGQI  720
SNMEGGGGFN EFDINACLST ESGEHYAYPT YCSSNVPDDK KVKPENEMNI PANPVDYQLS  780
SNFELPRSLY ENDHHAWLSS PGPSGIAVYK ENTYQPVSIP SIDVFHSVFA SL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	2e-90	M-type_MADS family protein