PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP043763.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 531aa MW: 59504.1 Da PI: 8.0154

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP043763.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	384	406	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k+F++ L H+r+H PCP043763.1 384 HKCRICNKVFRTYQALGAHQRVH 406 79*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence
MMEHVCKLCK KSFVSGRVLG GHMRCHGARK SAKTEKKIEM CRVDFEVEDD DHAGYGLRRN 60 PKKSWKFSGD SKFKASAGEE NETVCRCRVC GKGFDSMRAM FGHMRHHSGR ERKETRSCEV 120 CCKGFESLRA LATHSRCHSE RIRGTDRLET VSSSKMLSVD SCQYSSETMG LIRRKRSKRL 180 RYKNTNSSCS FSSFSVNESK YVTEFGEEVV EGAICLMIIS GSGSNLGRIS SVTESSDNNS 240 LSLEVQSPSQ KNWIMGKKGG VSGCDVCDDT VKLVDCISDC KNVSDEKKVF EFSENGSWFL 300 SDEEKNVEMA DRFSRGAGYK RPRPDGQSAF GLCDTEVEMN VDIIEEVELD VAAFGSKKLG 360 LNNKSMLYAT ESEVFADSQK KREHKCRICN KVFRTYQALG AHQRVHKSTS NSSAVKNEDH 420 EDRIPIAKLE CSDNSAAEGE TERVIENKGH KCSICLKVFA TGQALGGHKR VHFDKDPERG 480 AQESRVLKQQ ISNICDAFDL SRPVENGDVE VKSWWLGNEH KQEMLMGLMP N

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence

MMEHVCKLCK KSFVSGRVLG GHMRCHGARK SAKTEKKIEM CRVDFEVEDD DHAGYGLRRN  60
PKKSWKFSGD SKFKASAGEE NETVCRCRVC GKGFDSMRAM FGHMRHHSGR ERKETRSCEV  120
CCKGFESLRA LATHSRCHSE RIRGTDRLET VSSSKMLSVD SCQYSSETMG LIRRKRSKRL  180
RYKNTNSSCS FSSFSVNESK YVTEFGEEVV EGAICLMIIS GSGSNLGRIS SVTESSDNNS  240
LSLEVQSPSQ KNWIMGKKGG VSGCDVCDDT VKLVDCISDC KNVSDEKKVF EFSENGSWFL  300
SDEEKNVEMA DRFSRGAGYK RPRPDGQSAF GLCDTEVEMN VDIIEEVELD VAAFGSKKLG  360
LNNKSMLYAT ESEVFADSQK KREHKCRICN KVFRTYQALG AHQRVHKSTS NSSAVKNEDH  420
EDRIPIAKLE CSDNSAAEGE TERVIENKGH KCSICLKVFA TGQALGGHKR VHFDKDPERG  480
AQESRVLKQQ ISNICDAFDL SRPVENGDVE VKSWWLGNEH KQEMLMGLMP N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	320	324	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	4e-16	C2H2 family protein