PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP042842.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | CO-like | ||||||||
Protein Properties | Length: 415aa MW: 45098 Da PI: 6.4937 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 26.1 | 1.7e-08 | 47 | 89 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 +C+++++++++ C++ ++ lC++C +H+ H++++ PCP042842.1 47 ICERCNSQPASVRCTEERVSLCQNCDWMGHQAstsasgHKRQT 89 8*****************************7788888898765 PP | |||||||
2 | CCT | 58.5 | 2.3e-20 | 356 | 399 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+k RkFeK++rY+sRKa+A+ R+RvKGrF k+ PCP042842.1 356 RSNAVMRYKEKKKARKFEKRVRYASRKARADVRKRVKGRFIKAG 399 899*************************************9975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence |
MGYLCDYCQV QRSMVHCRSD AACLCLSCDR NVHSANALSR RHLRTLICER CNSQPASVRC 60 TEERVSLCQN CDWMGHQAST SASGHKRQTL NCYSGCPSSA ELSSIWSFVS DLPSNGESTC 120 EQEMGLMSIA DNGTRSDWSQ AESNTRQSAS GADEVNAAHS MEKSGILVGS SSVPERSHAR 180 HVVGQLSGSV NASLPKLYSH GGKGTGLPED DDLYDDLDMD EMELNLENYE ELFGVSLNHS 240 EELFKNGGID SLFGAKNVSR DCQDAVAAEG SSIGLGNAPQ PACSNEASVD SVMSTKTDPV 300 ICFPAKQAHS NLSFSGVTGE SSAGDCQDCG ASSKLLMGEP PWCHPCPESS TQSANRSNAV 360 MRYKEKKKAR KFEKRVRYAS RKARADVRKR VKGRFIKAGE AYDYDPLNQA RTRSY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.2 | 1e-115 | CO-like family protein |