PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP042325.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 457aa    MW: 52014.8 Da    PI: 6.5419
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP042325.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS375.76e-115564561373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal..ppsetseknsseelaal............... 81 
                  l++lL++cAe +s+ d+  a++l++ ls ++sp gd+++Rl++yf++AL+ rl+   ++ +++   p+++ ++  s+++ +                 
  PCP042325.1  56 LRHLLITCAELISHLDFPSANRLISLLSSNSSPFGDSTERLTHYFVKALSFRLNT-NPNYSRTTigPMTALTTAASASASS-Ssnylfppmlleeedd 151
                  68****************************************************9.3333333323333333333222222.1467999********* PP

         GRAS  82 .........klfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesgskeeleetger 164
                            ++++++P+++fshltaNqaIle+++++   +Hi+Dfdi++G+QWp+L+qaL +R+     ++pp+lRiT+ g+    + + l +tger
  PCP042325.1 152 neetlhscyLTLNQITPFIRFSHLTANQAILESIDSShLSIHILDFDIMHGVQWPPLMQALVERSynsplHPPPTLRITATGR----DLTLLLRTGER 245
                  *9999887556************************996789************************87777779**********....9********** PP

         GRAS 165 LakfAeelgvpfefnvl....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfl 258
                  L +fA++lg+ f+f++l    +a+  + +++ +L ++++EalaVn+vl lh+l+ ++         +L+ +ksl+Pkv++v+++ea+hn++ F++rf+
  PCP042325.1 246 LFRFAQSLGLAFQFHPLvlnnAARPSDLISPLTLGLHQNEALAVNCVLYLHTLVTDDSRD---LLLFLQKIKSLNPKVFTVANKEANHNNPLFFNRFV 340
                  *****************655445567788************************9444433...458******************************** PP

         GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek.WrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee 354
                  eal++y a+f+slea+lp++s+er  vE+  +gre+++vv  eg++r++rhe++e+ W+  l++aGF++v+ls +a +qaklllr ++ s+gy++   
  PCP042325.1 341 EALDHYGAVFESLEATLPPNSRERLAVEEW-FGREVKDVVGVEGEKRKQRHERYETfWEVVLRRAGFENVALSPFALSQAKLLLRLHYpSEGYQLRIL 437
                  ****************************97.***********************977***************************************** PP

         GRAS 355 sgslvlgWkdrpLvsvSaW 373
                  ++s++lgW++rpL+svS+W
  PCP042325.1 438 NDSFFLGWQNRPLFSVSSW 456
                  ******************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    
MGSFNSSHIQ QEEKEDHQNH PNNNNISDLQ LYHHHHVSDQ PPLIMSTSPD ISQTHLRHLL  60
ITCAELISHL DFPSANRLIS LLSSNSSPFG DSTERLTHYF VKALSFRLNT NPNYSRTTIG  120
PMTALTTAAS ASASSSSNYL FPPMLLEEED DNEETLHSCY LTLNQITPFI RFSHLTANQA  180
ILESIDSSHL SIHILDFDIM HGVQWPPLMQ ALVERSYNSP LHPPPTLRIT ATGRDLTLLL  240
RTGERLFRFA QSLGLAFQFH PLVLNNAARP SDLISPLTLG LHQNEALAVN CVLYLHTLVT  300
DDSRDLLLFL QKIKSLNPKV FTVANKEANH NNPLFFNRFV EALDHYGAVF ESLEATLPPN  360
SRERLAVEEW FGREVKDVVG VEGEKRKQRH ERYETFWEVV LRRAGFENVA LSPFALSQAK  420
LLLRLHYPSE GYQLRILNDS FFLGWQNRPL FSVSSWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-101GRAS family protein