PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP035132.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

CO-like

Protein Properties

Length: 441aa MW: 49074.1 Da PI: 5.1185

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP035132.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25.6	2.5e-08	16	59	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 ++ C+ + k++++fC ++ +lC+ C + H+ H++v PCP035132.1 16 AQACDSCLVKRARWFCAADDAFLCQRCDASVHSAnqlasrHQRV 59 678*****************************667888888876 PP
2	CCT	67.9	2.7e-23	372	415	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ PCP035132.1 372 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 415 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
MITDKKAANA MGGNTAQACD SCLVKRARWF CAADDAFLCQ RCDASVHSAN QLASRHQRVR 60 LQGSSVKANA SVQLIVEQAA PAWHKGFKRK ARTPRHNKKP GFAAKDEQEK VGLHPPLPFV 120 PEIGCQEANL MEDEENEDFE RLHYRVPIYD PFAAELCNIS SSDQVGNNTG AIGLDDEEIE 180 IRNTGNDLDN LGGFLRSDME LAEFAADVEN LLGGGLDEDC SDIKGVLGLL DEGKEVKVEE 240 EVEGIEFNPS ILDWNLYYDQ SSAVPVLMGS EEDKEEEEKV VVFMGAQSSD EIGFMENKQI 300 VMKRKNICLK LDYEAVITAW ASQGSPWTTG TRPELNPDEG WLDCMGMWPT EIHQAHGDSA 360 GCVSGRGDDP RREARVSRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR FVKRTTSSFG 420 GVGSSSSNAP AAAFPYLMIN K

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

MITDKKAANA MGGNTAQACD SCLVKRARWF CAADDAFLCQ RCDASVHSAN QLASRHQRVR  60
LQGSSVKANA SVQLIVEQAA PAWHKGFKRK ARTPRHNKKP GFAAKDEQEK VGLHPPLPFV  120
PEIGCQEANL MEDEENEDFE RLHYRVPIYD PFAAELCNIS SSDQVGNNTG AIGLDDEEIE  180
IRNTGNDLDN LGGFLRSDME LAEFAADVEN LLGGGLDEDC SDIKGVLGLL DEGKEVKVEE  240
EVEGIEFNPS ILDWNLYYDQ SSAVPVLMGS EEDKEEEEKV VVFMGAQSSD EIGFMENKQI  300
VMKRKNICLK LDYEAVITAW ASQGSPWTTG TRPELNPDEG WLDCMGMWPT EIHQAHGDSA  360
GCVSGRGDDP RREARVSRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR FVKRTTSSFG  420
GVGSSSSNAP AAAFPYLMIN K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	383	399	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	3e-78	CO-like family protein