PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP033800.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB_related

Protein Properties

Length: 685aa MW: 75191.9 Da PI: 6.8275

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP033800.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.2	1.9e-08	571	619	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v + G+g+W+ I r Rt ++k++w+++l PCP033800.1 571 AWTLVEVIKLVEGVSKCGTGRWSEIKRLSFasySYRTSVDLKDKWRNLL 619 7*************************9999999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 685 aa Download sequence
METVVGVEGN DEGMCEESGV EKSSSSLSSP KQIADPVVYK LVRVEGDGRL VPATDDEVME 60 VEDFLVDETV ELPVITEAGN GWCISNEESS SGKPQKESSE GVSHSENTEA DVKLSARLEY 120 IEEMLQKVKQ EERLRLACGS PDHSSAFMNV DIQCSDQHDK LPAIDERLQS EIPLQDIVPS 180 SSLSPDGSHI NESGRIGECS KQPLDGPIES GSSASVICTG LKPDINTLKG EICLDNLSIR 240 ELHELFRATF GRETTVKDKL WLKRRITMAL TNSCDVSTTT FTIVDNKLVN KGKDDSIQNA 300 DGMLTEGSDG EAKNLGYETS PTCHSSKMEN HVTVSGKRLV NISAELDCGS EDLHTDQRAA 360 KRIRKPTKRY IEELSEVESK DCSPKVISPV KSAGQRQTSP KSCRPLGNVP LNERAIATRL 420 DPLGSVTNVP PNERTFVTRL DSLGGSGVQV PYVSRVRRSR PRKNIMALMR FDMSGMGATA 480 KLVKEAFSVR SSVSESEHAD KVLKVRSASE RMKPRCTAEP EKDKRRSVMG TIEPRRNLGI 540 KQTDSSEDNS DDGTAQIPTA KGGMRRKHHR AWTLVEVIKL VEGVSKCGTG RWSEIKRLSF 600 ASYSYRTSVD LKDKWRNLLK ASVAQTPPDD GINSRKHASV PIPASILLKV RELAEMQVQV 660 PPNLGPSKLA TVSSRSVHQM RPGFL

Sequence ? help Back to Top

Protein Sequence Length: 685 aa Download sequence

METVVGVEGN DEGMCEESGV EKSSSSLSSP KQIADPVVYK LVRVEGDGRL VPATDDEVME  60
VEDFLVDETV ELPVITEAGN GWCISNEESS SGKPQKESSE GVSHSENTEA DVKLSARLEY  120
IEEMLQKVKQ EERLRLACGS PDHSSAFMNV DIQCSDQHDK LPAIDERLQS EIPLQDIVPS  180
SSLSPDGSHI NESGRIGECS KQPLDGPIES GSSASVICTG LKPDINTLKG EICLDNLSIR  240
ELHELFRATF GRETTVKDKL WLKRRITMAL TNSCDVSTTT FTIVDNKLVN KGKDDSIQNA  300
DGMLTEGSDG EAKNLGYETS PTCHSSKMEN HVTVSGKRLV NISAELDCGS EDLHTDQRAA  360
KRIRKPTKRY IEELSEVESK DCSPKVISPV KSAGQRQTSP KSCRPLGNVP LNERAIATRL  420
DPLGSVTNVP PNERTFVTRL DSLGGSGVQV PYVSRVRRSR PRKNIMALMR FDMSGMGATA  480
KLVKEAFSVR SSVSESEHAD KVLKVRSASE RMKPRCTAEP EKDKRRSVMG TIEPRRNLGI  540
KQTDSSEDNS DDGTAQIPTA KGGMRRKHHR AWTLVEVIKL VEGVSKCGTG RWSEIKRLSF  600
ASYSYRTSVD LKDKWRNLLK ASVAQTPPDD GINSRKHASV PIPASILLKV RELAEMQVQV  660
PPNLGPSKLA TVSSRSVHQM RPGFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	457	463	RRSRPRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	1e-116	MYB_related family protein