PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP033723.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 108aa    MW: 12505.4 Da    PI: 10.0254
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP033723.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.71.5e-081350744
                 HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
       SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                 s r++ f kR+  il K  EL + C++++ vi  +++g
  PCP033723.1 13 SDRTIMFQKRKRRILNKVRELTTVCGVNAVVIFRGPHG 50
                 67999****************************99998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    
MFRKKVKVAW VESDRTIMFQ KRKRRILNKV RELTTVCGVN AVVIFRGPHG NKPTVWHSGQ  60
VTEESRKLIE HFEPDLDLPS SSFSPYEGED EEKMMSKIGG FKNDMHGI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKVAWVESDRTIMFQKRKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.13e-12M-type_MADS family protein