PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP032801.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 425aa MW: 46599.7 Da PI: 8.6109

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP032801.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.3	9.1e-16	206	252	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRdriN+++ L++l+P+a K +Ka++L ++++Y+++Lq PCP032801.1 206 VHNQSERKRRDRINQKMKALQRLVPNA-----SKTNKASMLDEVIKYLQQLQ 252 6***********************9.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MQQQNQPNAS LLVPLSNYDV TELKLENGQL AMHGLGGLPP TSQSKPAWGR SMACDTLESI 60 VDQATCHKRD PNIIRHDQTP ANISSMVATS GGTWTDSSVQ VPPAQGWIRK RTQSDSGFFE 120 NNFSSKTNSI HEEHADPSSV RLCRDNDTTM STLVSFESPP SLKTKSIEED SACHGGLKNR 180 DDGRETTKGG KPSRSHSTRP RRAAAVHNQS ERKRRDRINQ KMKALQRLVP NASKTNKASM 240 LDEVIKYLQQ LQAQVQMMHS MRNFMPNGHM NMNMMMPLEI QQQQQQHLHQ MSLLAHMGMG 300 TGTGTLIHPT PVVAAAPPSF MPPFMMPPLM PPHPPPQAKP EPTGTNDGSD PLPDPYCSLL 360 AQQSMNMDLF NRMAALYRQQ VTPATAASSS PSQSSQFPTL EHQTAMGGAG ANGKHAMVPE 420 CSLQA

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MQQQNQPNAS LLVPLSNYDV TELKLENGQL AMHGLGGLPP TSQSKPAWGR SMACDTLESI  60
VDQATCHKRD PNIIRHDQTP ANISSMVATS GGTWTDSSVQ VPPAQGWIRK RTQSDSGFFE  120
NNFSSKTNSI HEEHADPSSV RLCRDNDTTM STLVSFESPP SLKTKSIEED SACHGGLKNR  180
DDGRETTKGG KPSRSHSTRP RRAAAVHNQS ERKRRDRINQ KMKALQRLVP NASKTNKASM  240
LDEVIKYLQQ LQAQVQMMHS MRNFMPNGHM NMNMMMPLEI QQQQQQHLHQ MSLLAHMGMG  300
TGTGTLIHPT PVVAAAPPSF MPPFMMPPLM PPHPPPQAKP EPTGTNDGSD PLPDPYCSLL  360
AQQSMNMDLF NRMAALYRQQ VTPATAASSS PSQSSQFPTL EHQTAMGGAG ANGKHAMVPE  420
CSLQA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	211	216	ERKRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	6e-39	bHLH family protein