PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP031252.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

ARF

Protein Properties

Length: 799aa MW: 88256.4 Da PI: 6.8102

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP031252.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.4	2.7e-23	164	265	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ F ++++L +gD v+F + +++el PCP031252.1 164 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFISQKNLVAGDAVLFL--RGENGEL 258 99**************************963.3445679********************************************..4499999 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ PCP031252.1 259 RLGIRRA 265 **996 PP
2	Auxin_resp	119.9	2e-39	290	371	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+stks+F+v+Y+Pras++eFv++++k+++++ ++v+ G Rfkm+f+ +dsserr+sG+v+g++dldp+rWpnSkWr+L PCP031252.1 290 VANAISTKSMFHVFYSPRASHAEFVIPYQKYVRSIANPVTTGNRFKMRFDRDDSSERRCSGVVTGITDLDPFRWPNSKWRCL 371 689******************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 799 aa Download sequence
MEIDLNHAVR EVEKNAYCNG DCGGVCVYCL SSSTSSSSSN SSSAPVASSI YLELWHACAG 60 PLISLPKKGN VVVYFPQGHL EQVASSSPFS PMEMPTFDLH PQIFCKVVNV QLLANKENDE 120 VYTHVTLLPQ PELVGTNLEG KGLEELGVDE GDGGSPTKST PHMFCKTLTA SDTSTHGGFS 180 VPRRAAEDCF PPLDYKQQRP SQELVAKDLH GVEWRFRHIY RGQPRRHLLT TGWSIFISQK 240 NLVAGDAVLF LRGENGELRL GIRRAVRPRN GLPDSVVGNQ NSYPSVLSLV ANAISTKSMF 300 HVFYSPRASH AEFVIPYQKY VRSIANPVTT GNRFKMRFDR DDSSERRCSG VVTGITDLDP 360 FRWPNSKWRC LMVRWDEDIG NDHQERVSPW EVDPSVSLPP LSIQSSPRLK KLRTSLQGTP 420 PVHSMTAGGA GFKDFEESVK SSKVLQGQEN IGFISPLYGG DTVNRPQDFE MHASAHLSLA 480 SNATQKATID ELMRAHRTPY TGFAESDRFP KVLQGQEICP LRSLTGKANF TLGDWESNNG 540 CAPFNVYQPP KPNYFSLASG SLPNMYFPYG DIHRAGQDPT MCSNATNLAR EKVQINPYSM 600 QMGVARNEVG RPNKPSEHKT QESTSTLPAL VPIPRNPNDK DYNGTVTGCK LFGFSLTGDN 660 PSPNSQSSSK RSCTKVHKQG SLVGRAIDLA KLNGYGDLLT ELERLFGMEG LLRDSDKGWR 720 ILYTDSENDM MVVGDDPWHE FCNVVSKIHI YTQEEVEKMT IGMISDDTQS CLEQAPVMLE 780 VSKSSSVSQP DSSPTAVRV

Sequence ? help Back to Top

Protein Sequence Length: 799 aa Download sequence

MEIDLNHAVR EVEKNAYCNG DCGGVCVYCL SSSTSSSSSN SSSAPVASSI YLELWHACAG  60
PLISLPKKGN VVVYFPQGHL EQVASSSPFS PMEMPTFDLH PQIFCKVVNV QLLANKENDE  120
VYTHVTLLPQ PELVGTNLEG KGLEELGVDE GDGGSPTKST PHMFCKTLTA SDTSTHGGFS  180
VPRRAAEDCF PPLDYKQQRP SQELVAKDLH GVEWRFRHIY RGQPRRHLLT TGWSIFISQK  240
NLVAGDAVLF LRGENGELRL GIRRAVRPRN GLPDSVVGNQ NSYPSVLSLV ANAISTKSMF  300
HVFYSPRASH AEFVIPYQKY VRSIANPVTT GNRFKMRFDR DDSSERRCSG VVTGITDLDP  360
FRWPNSKWRC LMVRWDEDIG NDHQERVSPW EVDPSVSLPP LSIQSSPRLK KLRTSLQGTP  420
PVHSMTAGGA GFKDFEESVK SSKVLQGQEN IGFISPLYGG DTVNRPQDFE MHASAHLSLA  480
SNATQKATID ELMRAHRTPY TGFAESDRFP KVLQGQEICP LRSLTGKANF TLGDWESNNG  540
CAPFNVYQPP KPNYFSLASG SLPNMYFPYG DIHRAGQDPT MCSNATNLAR EKVQINPYSM  600
QMGVARNEVG RPNKPSEHKT QESTSTLPAL VPIPRNPNDK DYNGTVTGCK LFGFSLTGDN  660
PSPNSQSSSK RSCTKVHKQG SLVGRAIDLA KLNGYGDLLT ELERLFGMEG LLRDSDKGWR  720
ILYTDSENDM MVVGDDPWHE FCNVVSKIHI YTQEEVEKMT IGMISDDTQS CLEQAPVMLE  780
VSKSSSVSQP DSSPTAVRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60450.1	0.0	ARF family protein