PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP028671.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 160aa    MW: 17685.5 Da    PI: 5.348
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP028671.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011125141117
                  EEETTTTEEESSHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                  ++Cp C+k+F+r  n++
  PCP028671.1 125 FSCPVCSKTFNRYNNMQ 141
                  89*********988765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    
MQTPFTSTTI DEDFQDEDSI FLSLGPPGQD NHVPKQYHLI YHHPSASSTQ PDHHQTFYHD  60
YPNPNPDTED GTITVALNIE PPTSGGGRPS SSFISNPNHS HIGGPVEGQY WIPSPAQILV  120
GPTQFSCPVC SKTFNRYNNM QVVLIISIII NTQINTTTIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.16e-24C2H2 family protein