PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP028626.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 305aa MW: 32721.9 Da PI: 8.4099

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP028626.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.9	1.2e-31	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C++lr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+++e PCP028626.1 4 SCNGCRILRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQVAVE 101 6************************************************************************************************* PP DUF260 94 lallkee 100 ++l +++ PCP028626.1 102 AVLKGQS 108 9998775 PP

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence
MRISCNGCRI LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQVAV EAVLKGQSIT PITSEAAANG 120 HGPPLKAYDI RHVSKDENSA ASNDPQKVKT RYRFKRSAVK PKTNKVGSGS GSGCGSGADE 180 SAKPSWTGCS ADKFNRSMSH ESSLSHQSEA AATVDGDSKE SESMISSETA EAELFFRAEP 240 ESARKRTESV QDGELALELT LGLQPQSRAN HVVPVKKRRI EAGFGGVSPA DDGACKIELG 300 LDYVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	2e-99	LBD family protein