PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP028035.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 838aa    MW: 91878.5 Da    PI: 6.4298
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP028035.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-181775357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  PCP028035.1 17 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                 5679*****************************************************97 PP
2START168.83.7e-531613692205
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d + W ++++++++l+v+ ++  g+++l +++
  PCP028035.1 161 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDLPSWLRDCRAVDVLNVLPTAngGTIELLYMQ 257
                  7899******************************************************.**************************9999********* PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  l+a+++l+p  df+ +Ry+  l++g++v++ +S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+  +++++lr+l++s+++ 
  PCP028035.1 258 LYAPTTLAPaCDFWLLRYTSVLEDGSLVVCARSLKNTQNGPTmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPCSVPEVLRPLYESSAVL 355
                  ****************************************9998899*************************************************** PP

                  HHHHHHHHTXXXXX CS
        START 192 gaktwvatlqrqce 205
                  ++k+++a+l+++++
  PCP028035.1 356 AQKMTMAALRQLRQ 369
                  **********9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    
MAMSCKDGNK HALDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLS AMNKLLMEEN DRLQKQVSHL VYENGYFRQH  120
SQGTTLATKD TSCESVVTSG QHHLTPQHPP RDASPAGLLS IAEETLAEFL SKATGTAVEW  180
VQMPGMKPGP DSIGIVAISH GCTGVAARAC GLVGLEPTRV AEILKDLPSW LRDCRAVDVL  240
NVLPTANGGT IELLYMQLYA PTTLAPACDF WLLRYTSVLE DGSLVVCARS LKNTQNGPTM  300
PPVQHFVRAE MLPSGYLIRP CEGGGSIIHI VDHMDLEPCS VPEVLRPLYE SSAVLAQKMT  360
MAALRQLRQI AHEVSQSNVT GWGRRPAALR ALSQRLSRGF NDALNGFTDE GWSMMGNDGM  420
DDVTILINSS PDKLMGLNLS FGNGFPAVSN SVLCAKASML LQNVPPAILL RFLREHRSEW  480
ADNNIDAYSA AAVKVGPCSL AGSRVGSFGG QVILPLAHTL EHEEFLEVIK LEGVGHSPED  540
AMMPREMFLL QLCSGMDENA VGSCAELIFA PIDASFADDA PLLPSGFRII PLDYGKEASS  600
PNRTLDLASA LEIGPTGNKG SSEYSASGGC VRSVMTIAFE FACETHMQEH VASMARQYVR  660
SIISSVQRVA LALSPSNLSS QAGLRSPLGT PEAQTLARWI CNSYRCYLGV ELLKLGNEGS  720
ESILKSLWHH SDAIMCCSLK ALPVFTFANQ AGLDMLETTL VALQDITLEK IFDDHGRKTL  780
CSEFPQIMQQ GFTCLQGGIC LSSMGRPVSY ERAVAWKVLN EEETAHCMCF LFVNWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein