PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP027510.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 303aa    MW: 33208.5 Da    PI: 6.5685
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP027510.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.36.4e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT +E+e l  +v+++G+g Wk I +          R+  ++k++w++ 
      PCP027510.1  5 KQKWTVDEEEALRAGVRKHGTGKWKDIQKDPEfnlflSSRSNIDLKDKWRNM 56
                     79***********************************9************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MGNPKQKWTV DEEEALRAGV RKHGTGKWKD IQKDPEFNLF LSSRSNIDLK DKWRNMTVSG  60
TGPREKSRPK TKTNQDATVA PVSVPQTSAA APVRRDSPAA AAPVRRDSPA AAPGGRDLPA  120
ATPVRRDAPA ATPVRRDAPT ETPVRRDTTP VADDSAISVS DAIPAPVCNA MIFEALSAST  180
DPNGLDTSAI ASYIEQRIEV PQNFRRSLTG RLRRLVLQDK LEKIQNCYKV KIDTVSVSSD  240
MLEESARAAA HSIAEAEYRS YLAAEEMKEA ERIYFMAENT ESMMQLAKEI LEQCSEGEVL  300
MVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.23e-44MYB_related family protein