PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP026039.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 532aa MW: 60480.5 Da PI: 6.7972

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP026039.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.6	1.9e-29	122	207	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea PCP026039.1 122 RWPRQETLTLLEIRSRLDFKFKEANQKGPLWDEVSRIMfEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 207 8***********************************99**************************98..55667*****85 PP

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence
MEMEDQYNMS DLRQLMNGGR THFPTIPLQS PTELFPNHHR EPPPTLHHQH HPYEQLMMMG 60 RSQTHEMISR GLHHHHEFRS PDSTSAAGGV TTPTTVTAAP SLSGGGLETE AGGCLGGEGS 120 GRWPRQETLT LLEIRSRLDF KFKEANQKGP LWDEVSRIMF EEHGYQRSGK KCREKFENLY 180 KYYKKTKEGK AGRQDGKHYR FFRQLEALYG ETTNAVVSPS LPVETHFVGN NSSNYRYQAA 240 GNAQANQEIT TPYHHQSSDQ KHCDSLSLSN SSEFETSSSE DQDINNDVSA AAMDDDLQEV 300 KTTRKRRGGG GGRGWKAKIK EFIDVQMRKL MEKQEEWLER LMRTLEQKER ERVVREEEWR 360 KQEVDRVERE HKFWAKERAW IEARDKALMD ALHKISGGSS STDQAKATNY NSSSPDHHDR 420 DQIVHNMSRS TKELLNKKRK ENANSRSASA ACYFQSNESC SSLYSSQGGY CGEMSNEQGN 480 HDGSNNSPNC GNNANNVGSN AVPDNCFPFL MSEGENLWEN YGLKLSTESQ NQ

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence

MEMEDQYNMS DLRQLMNGGR THFPTIPLQS PTELFPNHHR EPPPTLHHQH HPYEQLMMMG  60
RSQTHEMISR GLHHHHEFRS PDSTSAAGGV TTPTTVTAAP SLSGGGLETE AGGCLGGEGS  120
GRWPRQETLT LLEIRSRLDF KFKEANQKGP LWDEVSRIMF EEHGYQRSGK KCREKFENLY  180
KYYKKTKEGK AGRQDGKHYR FFRQLEALYG ETTNAVVSPS LPVETHFVGN NSSNYRYQAA  240
GNAQANQEIT TPYHHQSSDQ KHCDSLSLSN SSEFETSSSE DQDINNDVSA AAMDDDLQEV  300
KTTRKRRGGG GGRGWKAKIK EFIDVQMRKL MEKQEEWLER LMRTLEQKER ERVVREEEWR  360
KQEVDRVERE HKFWAKERAW IEARDKALMD ALHKISGGSS STDQAKATNY NSSSPDHHDR  420
DQIVHNMSRS TKELLNKKRK ENANSRSASA ACYFQSNESC SSLYSSQGGY CGEMSNEQGN  480
HDGSNNSPNC GNNANNVGSN AVPDNCFPFL MSEGENLWEN YGLKLSTESQ NQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10000.1	1e-77	Trihelix family protein