PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP026009.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

SBP

Protein Properties

Length: 551aa MW: 59391.3 Da PI: 8.4724

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP026009.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	138.2	2.3e-43	79	156	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegCe+dls ak y++rhkvC hsk+p+v+v+gleqrfCqqCsrfh l efD++krsCrrrLa+hnerrrk+q+ PCP026009.1 79 RCQVEGCEVDLSGAKPYYSRHKVCGLHSKTPTVIVAGLEQRFCQQCSRFHLLPEFDQGKRSCRRRLAGHNERRRKPQP 156 6**************************************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 551 aa Download sequence
MDMGSSSMTE SGSSSSSSPP NSSAESLNGL KFGRKIYFED GGCGALHKSS SGSAAGSSSA 60 GATPPKKQRG GGNLGQPPRC QVEGCEVDLS GAKPYYSRHK VCGLHSKTPT VIVAGLEQRF 120 CQQCSRFHLL PEFDQGKRSC RRRLAGHNER RRKPQPGSIL SARGRLSSSL YENSNRVGSF 180 LMDFTAYPRL SGRDEWTTTR TSERAPVNQN ANDAGKFLQQ PWQSNSEIST SGFYLQGSAG 240 GTSYPGPGIP PGECVTVVTD SSCALSLLSN QPWGSRNRVS GAGMNSLMNT QGVPVAQTVP 300 HSATSNHFPT TSWGFKGNEN GSSSHGMLPD LGLGQISQPL SSQYSGVLEL SQQGRRQQHM 360 ELGHTRGYDS TIESGIYPFV RVSAIVERKG MGGTLLLLHS GGSLEFSLGV EALENQQRAH 420 MALLEAKKIA SQYQKEADKC NSGMETCEEA REKAEATVEA QRKQTAHQVL YGTLVIEQKV 480 PQVYDPAENE KLCVFLIEKA LGACPEGSAE ILGIFNLHWV QQRVSKEEKE KDPNGKQGTT 540 SNKQSSILTF I

Sequence ? help Back to Top

Protein Sequence Length: 551 aa Download sequence

MDMGSSSMTE SGSSSSSSPP NSSAESLNGL KFGRKIYFED GGCGALHKSS SGSAAGSSSA  60
GATPPKKQRG GGNLGQPPRC QVEGCEVDLS GAKPYYSRHK VCGLHSKTPT VIVAGLEQRF  120
CQQCSRFHLL PEFDQGKRSC RRRLAGHNER RRKPQPGSIL SARGRLSSSL YENSNRVGSF  180
LMDFTAYPRL SGRDEWTTTR TSERAPVNQN ANDAGKFLQQ PWQSNSEIST SGFYLQGSAG  240
GTSYPGPGIP PGECVTVVTD SSCALSLLSN QPWGSRNRVS GAGMNSLMNT QGVPVAQTVP  300
HSATSNHFPT TSWGFKGNEN GSSSHGMLPD LGLGQISQPL SSQYSGVLEL SQQGRRQQHM  360
ELGHTRGYDS TIESGIYPFV RVSAIVERKG MGGTLLLLHS GGSLEFSLGV EALENQQRAH  420
MALLEAKKIA SQYQKEADKC NSGMETCEEA REKAEATVEA QRKQTAHQVL YGTLVIEQKV  480
PQVYDPAENE KLCVFLIEKA LGACPEGSAE ILGIFNLHWV QQRVSKEEKE KDPNGKQGTT  540
SNKQSSILTF I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	3e-60	SBP family protein