PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP025812.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 431aa MW: 46347.4 Da PI: 9.6439

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP025812.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	186	208	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg+ F+ ++L++H+ H PCP025812.1 186 ACSQCGEIFPKMESLEHHQAIrH 208 6******************9877 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MALFTFAPEA TEPKKKARPP PNRRQKQPSS NNKKQQKPPP RSSSSSWDHI KNLLTCKQIE 60 GSRVHDPSKN NIVGGAAAGQ SGGYSKLGSS CSSICSFRDV AHGNTRVVHR ADNSSPESST 120 LGQETGLLSR KPATRSARSN GSGSFAAYHT SSSSRGMQFR KLSGCYECHM IVDPSRCPVP 180 RSTICACSQC GEIFPKMESL EHHQAIRHAV SELGVEDSGR NIVEIIFKSS WLKKDIPFCK 240 IERILKVQNT QRTIQRFEDC RDAVKNRALS STRKDPRCAA DGNELLRFHC ASISCTLGAR 300 GSSSLCGSVP GCGVCTVIRH GFQGKAVAGG DQGGSKGVRT TASSGRAHDS LNCTDGRRAM 360 LVCRVIAGRV RRIADGGPPE EDGLSQLSAA AGSYDSVAGF AGIYSNLEEL LVYNPRAILP 420 CFVVIYKAIE S

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MALFTFAPEA TEPKKKARPP PNRRQKQPSS NNKKQQKPPP RSSSSSWDHI KNLLTCKQIE  60
GSRVHDPSKN NIVGGAAAGQ SGGYSKLGSS CSSICSFRDV AHGNTRVVHR ADNSSPESST  120
LGQETGLLSR KPATRSARSN GSGSFAAYHT SSSSRGMQFR KLSGCYECHM IVDPSRCPVP  180
RSTICACSQC GEIFPKMESL EHHQAIRHAV SELGVEDSGR NIVEIIFKSS WLKKDIPFCK  240
IERILKVQNT QRTIQRFEDC RDAVKNRALS STRKDPRCAA DGNELLRFHC ASISCTLGAR  300
GSSSLCGSVP GCGVCTVIRH GFQGKAVAGG DQGGSKGVRT TASSGRAHDS LNCTDGRRAM  360
LVCRVIAGRV RRIADGGPPE EDGLSQLSAA AGSYDSVAGF AGIYSNLEEL LVYNPRAILP  420
CFVVIYKAIE S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	20	27	PPNRRQKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-166	C2H2 family protein