PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP024738.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HD-ZIP

Protein Properties

Length: 273aa MW: 30934.4 Da PI: 5.1894

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP024738.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.8	1.1e-19	55	108	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq+++Le+ Fe ++++ e++ +LA++lgL+ rqV +WFqNrRa++k PCP024738.1 55 KKRRLSSEQVKALERSFEVENKLEPERKVKLAEELGLQPRQVAIWFQNRRARWK 108 45689************************************************9 PP
2	HD-ZIP_I/II	132.3	1.8e-42	55	146	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrls+eqvk+LE+sFe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlE+dy++Lk+ yd lk++ ++Le+++++L+e+l++ PCP024738.1 55 KKRRLSSEQVKALERSFEVENKLEPERKVKLAEELGLQPRQVAIWFQNRRARWKTKQLERDYSVLKADYDGLKHNFDSLERQNKALAEKLSQ 146 9**************************************************************************************99976 PP

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence
MKRFGSSESL GALVSNFPSK EEVKLAKDKY GYSKEFQAML DSLEQEDIGE EMSGKKRRLS 60 SEQVKALERS FEVENKLEPE RKVKLAEELG LQPRQVAIWF QNRRARWKTK QLERDYSVLK 120 ADYDGLKHNF DSLERQNKAL AEKLSQLKAK LFTEGAESNG SAKEESPIST CKSSENIEVE 180 FKNLKTKDGS SDSDSNEVLM KEESNGNSCL GYNNNNSISS TSMVNWFQLS ESRSVAAGKG 240 FQGQLVRMEE QSLFTTDESC NFFSVDQAPS LHW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	55	84	KKRRLSSEQVKALERSFEVENKLEPERKVK
2	103	111	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	7e-62	HD-ZIP family protein