PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP024607.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family NF-YA
Protein Properties Length: 297aa    MW: 32663.8 Da    PI: 9.6187
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP024607.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1032.7e-32121177158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  +ep+YVNaKQyq+Il+RRq+Rak+e e+kl +k rkpylheSRh+hA+rR+Rg+gGrF
  PCP024607.1 121 QEPVYVNAKQYQGILRRRQARAKAELERKL-IKVRKPYLHESRHQHAMRRARGTGGRF 177
                  69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MPKWWVRSND GQSLSNDETN EDDDDATKDS HITSPRSAGN YGQDHRNVKH VGSGVPTVRD  60
DCLAQPPQLE LVGHSIACAS NPYQDPYYGG MMAAYGHQPL GYPPFFGMPH ARMPLPLEMA  120
QEPVYVNAKQ YQGILRRRQA RAKAELERKL IKVRKPYLHE SRHQHAMRRA RGTGGRFAKK  180
TNGDNSNSTR QEKGRGSGPA HSSQSGSSSG SEPFPSDSAE TWNSPNSQRE ARGSQVHDAY  240
AAHNYANGSG CYQPHGGLQA SMYPSYSGKR GEGGDWKGQQ QGNISSNQAS QRRLAIQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.12e-72NF-YA family protein