PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP024261.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

CO-like

Protein Properties

Length: 387aa MW: 42505.4 Da PI: 6.2854

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP024261.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.5	5e-07	15	58	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r+C+ ++ + l+C+ ++ lC +C e H+ Ht++ PCP024261.1 15 KRVCDYCGTSMALLYCRADSAKLCFSCDREVHSAnqlftkHTRS 58 589****99*******************667888888875 PP
2	zf-B_box	30.6	6.9e-10	59	105	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..........Htvvp 41 C+ +++ ++++fC++ ++ lC++C e+H + H+++p PCP024261.1 59 LLCDACDKSPASIFCTTEGSVLCQNCDWESH-NltsssaatavHDRRP 105 57*****************************.5466677777776665 PP
3	CCT	63	9.1e-22	343	385	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Re al+RYkeK+ktR++eK+irYesRK++AesR R+KGrF+k PCP024261.1 343 RETALSRYKEKKKTRRYEKHIRYESRKVRAESRTRIKGRFAKM 385 99***************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MNGGTRNEES EATHKRVCDY CGTSMALLYC RADSAKLCFS CDREVHSANQ LFTKHTRSLL 60 CDACDKSPAS IFCTTEGSVL CQNCDWESHN LTSSSAATAV HDRRPLEGFS GCPCLSEMLA 120 VVGFENMDKK ALLLSDEGGG GGGGGSGFWG CGVGGIDGFS DLEEGFSDFP VWDTPSVVSL 180 DDLIVNNPAY KFQAMGVPPL PKNRNAACGQ HKEEILHQLR VLVKSEPNLF GEDVEVKGFQ 240 SLASEQNPQP GRFFTGFEHD AEPTAFPAYE ARESQYNDCG KTENQDSCPK TMLRSYLQDC 300 CVVPDKHSYN DGSGSRSNEG PGGEMNSGAS SAFPKVVPHC QNRETALSRY KEKKKTRRYE 360 KHIRYESRKV RAESRTRIKG RFAKMDS

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MNGGTRNEES EATHKRVCDY CGTSMALLYC RADSAKLCFS CDREVHSANQ LFTKHTRSLL  60
CDACDKSPAS IFCTTEGSVL CQNCDWESHN LTSSSAATAV HDRRPLEGFS GCPCLSEMLA  120
VVGFENMDKK ALLLSDEGGG GGGGGSGFWG CGVGGIDGFS DLEEGFSDFP VWDTPSVVSL  180
DDLIVNNPAY KFQAMGVPPL PKNRNAACGQ HKEEILHQLR VLVKSEPNLF GEDVEVKGFQ  240
SLASEQNPQP GRFFTGFEHD AEPTAFPAYE ARESQYNDCG KTENQDSCPK TMLRSYLQDC  300
CVVPDKHSYN DGSGSRSNEG PGGEMNSGAS SAFPKVVPHC QNRETALSRY KEKKKTRRYE  360
KHIRYESRKV RAESRTRIKG RFAKMDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	1e-77	CO-like family protein