PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP023285.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 899aa MW: 98430.1 Da PI: 7.0212

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP023285.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.4	1.3e-08	371	419	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq PCP023285.1 371 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 419 58***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 899 aa Download sequence
MDMGDQDKFE LENRNDDPMN FSPGITPDWR FGGSNITNTS MGLVPTGNSM AVSKGDLVGS 60 SSRPSASMAE SFNPTLWDHP TSSQDLGFCD MNVQTSASTS DSIGIRKGIP ASLRSGIDRA 120 LDMCWNPPNS MLKGGMFLPN GPGVLPQSLS QFPADSAFIE RAARFSCFNG GSFSDMVNPF 180 GFPQSMSMYS KSGGLMPWTQ ELVAGNGSKG VPGVHSQRNE LNGDVSLPMK QGTTEGSPLK 240 NEKKSESLAK SHDEAKHAIG GSGNESDEAD SSGGGGGGQE EPSMLEGAKP SSKGFKKRKR 300 SRQANELDQA NAQQPGESAM DITEFQDKGE QQPASTPNKT TGKQGKQGSQ ASEPPKEEYI 360 HVRARRGQAT NSHSLAERVR REKISERMKF LQDLVPGCSK VTGKAVMLDE IINYVQSLQR 420 QVEFLSMKLA TVNPRLDFNI EGLLAKDILQ SRVGPSSTLG FSPDMPMIYR QLHPSQPGLI 480 QAGLPGMGSS SDLLRRAMGS QMTQMTGGFK EPSQLPNVWE DELHNVVQMS YGGSTPPSSQ 540 DVDAEGLWGD VFFLRLLLQL TQALQPSRNH AQAKKLHSQI IKTVTNPETF LLNNLVTTYG 600 RLGNFKLCPP FVRPNASPKP FLLECHSFCY SKSGRLSEMQ EIFNRMPTRD GVSWNSLNSG 660 HASCGSVAEA VKVYSLLLRD GPGNLNRITF STMLVLSSSQ GCVNLGRQIS ENWMHFTLYG 720 KCGSIEDSHR LFDEMEITDE VSWTALVSGY AQFGKAYETF VLFERMLAHG LKPDGVTFIG 780 VLSACGRAGL VEKGHHYIES MSPRMLQAIS ALKPLCSKGK WDEVAKLRRG MRDKGARKEL 840 GCSWIKYKNR VHIFSADDQS SPFSDQIYAK LEELNCKMIE KGYEQDMSSV LHDVEESEK

Sequence ? help Back to Top

Protein Sequence Length: 899 aa Download sequence

MDMGDQDKFE LENRNDDPMN FSPGITPDWR FGGSNITNTS MGLVPTGNSM AVSKGDLVGS  60
SSRPSASMAE SFNPTLWDHP TSSQDLGFCD MNVQTSASTS DSIGIRKGIP ASLRSGIDRA  120
LDMCWNPPNS MLKGGMFLPN GPGVLPQSLS QFPADSAFIE RAARFSCFNG GSFSDMVNPF  180
GFPQSMSMYS KSGGLMPWTQ ELVAGNGSKG VPGVHSQRNE LNGDVSLPMK QGTTEGSPLK  240
NEKKSESLAK SHDEAKHAIG GSGNESDEAD SSGGGGGGQE EPSMLEGAKP SSKGFKKRKR  300
SRQANELDQA NAQQPGESAM DITEFQDKGE QQPASTPNKT TGKQGKQGSQ ASEPPKEEYI  360
HVRARRGQAT NSHSLAERVR REKISERMKF LQDLVPGCSK VTGKAVMLDE IINYVQSLQR  420
QVEFLSMKLA TVNPRLDFNI EGLLAKDILQ SRVGPSSTLG FSPDMPMIYR QLHPSQPGLI  480
QAGLPGMGSS SDLLRRAMGS QMTQMTGGFK EPSQLPNVWE DELHNVVQMS YGGSTPPSSQ  540
DVDAEGLWGD VFFLRLLLQL TQALQPSRNH AQAKKLHSQI IKTVTNPETF LLNNLVTTYG  600
RLGNFKLCPP FVRPNASPKP FLLECHSFCY SKSGRLSEMQ EIFNRMPTRD GVSWNSLNSG  660
HASCGSVAEA VKVYSLLLRD GPGNLNRITF STMLVLSSSQ GCVNLGRQIS ENWMHFTLYG  720
KCGSIEDSHR LFDEMEITDE VSWTALVSGY AQFGKAYETF VLFERMLAHG LKPDGVTFIG  780
VLSACGRAGL VEKGHHYIES MSPRMLQAIS ALKPLCSKGK WDEVAKLRRG MRDKGARKEL  840
GCSWIKYKNR VHIFSADDQS SPFSDQIYAK LEELNCKMIE KGYEQDMSSV LHDVEESEK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	296	301	KKRKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.1	1e-109	bHLH family protein