PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP023237.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

CO-like

Protein Properties

Length: 415aa MW: 45450.5 Da PI: 6.2812

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP023237.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.9	1.5e-06	4	45	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +C+ +++++ +C++++ +lC +C + H+ H+++ PCP023237.1 4 MCDFCGNQRSMVYCRSDDACLCLSCDRNVHSAnalsrrHSRI 45 6*****************************657777778766 PP
2	zf-B_box	23.9	8.5e-08	46	89	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 +C++++++++ C++ ++ lC++C +H+ H++++ PCP023237.1 46 LICDRCNSQPAFVRCTEERMSLCQNCDWMGHEAstsasmHKRQT 89 69*****************************7788888888765 PP
3	CCT	58.5	2.3e-20	356	399	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+k RkFeK++rY+sRKa+A+ R+RvKGrF k+ PCP023237.1 356 RSNAVMRYKEKKKARKFEKRVRYASRKARADVRKRVKGRFIKAG 399 899*************************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MGYMCDFCGN QRSMVYCRSD DACLCLSCDR NVHSANALSR RHSRILICDR CNSQPAFVRC 60 TEERMSLCQN CDWMGHEAST SASMHKRQTL NCYTGCPSSA ELSSIWSFVS ELPSNGESAC 120 EQEMGLMSIA DNSTATDWNQ SESNTRQNAS GADEVNATHS MHKSGVLVGS PSLPERNHAR 180 HVVGQLSGSV NASLPKLYSH GPKGSGLPED DDLYDGFDMD EMDLNLENYD ELFGVSFNHS 240 EELFKNGGID SLFGARNMSR DYQDAVAAEG SSVGLGNTPQ PVCSNAASAD SVMSTKTDPI 300 ICFPVKQAHS NPSFSGVTGE SSAGDCQDCG ASSMLLMGEP PWCSPCPESS MQSANRSNAV 360 MRYKEKKKAR KFEKRVRYAS RKARADVRKR VKGRFIKAGE AYDYDPLNQA RTRSY

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MGYMCDFCGN QRSMVYCRSD DACLCLSCDR NVHSANALSR RHSRILICDR CNSQPAFVRC  60
TEERMSLCQN CDWMGHEAST SASMHKRQTL NCYTGCPSSA ELSSIWSFVS ELPSNGESAC  120
EQEMGLMSIA DNSTATDWNQ SESNTRQNAS GADEVNATHS MHKSGVLVGS PSLPERNHAR  180
HVVGQLSGSV NASLPKLYSH GPKGSGLPED DDLYDGFDMD EMDLNLENYD ELFGVSFNHS  240
EELFKNGGID SLFGARNMSR DYQDAVAAEG SSVGLGNTPQ PVCSNAASAD SVMSTKTDPI  300
ICFPVKQAHS NPSFSGVTGE SSAGDCQDCG ASSMLLMGEP PWCSPCPESS MQSANRSNAV  360
MRYKEKKKAR KFEKRVRYAS RKARADVRKR VKGRFIKAGE AYDYDPLNQA RTRSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.2	1e-121	CO-like family protein