PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP022775.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 461aa MW: 50528.4 Da PI: 9.3112

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP022775.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.3e-05	73	95	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PCP022775.1 73 FVCEICNKGFQRDQNLQLHRRGH 95 89*******************88 PP
2	zf-C2H2	11.7	0.00081	150	172	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ PCP022775.1 150 WKCDKCSKIYAVQSDWKAHSKTC 172 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence
MSNSTSLSEE ANSVSSDFAA ALNPLLLSTN ISSHQSDQPP NKIKKKRSLP GNPDPDAEVI 60 ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRNSKDQI RKRAYVCPEP 120 SCVHHHPSRA LGDLTGIKKH FCRKHGEKKW KCDKCSKIYA VQSDWKAHSK TCGTREYRCD 180 CGTLFSRKDS FITHRAFCDA LAEESARLSA NQFATATTTT AAITPQISLF PFPTHQQQHF 240 TNPNTPLLPF TTISLTPWDL PQSHQNPNTN PTQNSPLHHL IKPESHRHFP PRPPQPQQPH 300 NGLITSPFQG LHVSTQPNSN PSTSSAHLSA TALLQKAAAV GAAAAQQGQS AGLTVGEFGT 360 ASHMISTEYL GGFTSGDVST WRKTDSLTRD FLGLNGDGTG NNNNNNNNVR AVHVKDMLPY 420 AGGVGFHQPP SERLGGLDSQ LKPQGFGFAE TTTASETWGD Y

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence

MSNSTSLSEE ANSVSSDFAA ALNPLLLSTN ISSHQSDQPP NKIKKKRSLP GNPDPDAEVI  60
ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRNSKDQI RKRAYVCPEP  120
SCVHHHPSRA LGDLTGIKKH FCRKHGEKKW KCDKCSKIYA VQSDWKAHSK TCGTREYRCD  180
CGTLFSRKDS FITHRAFCDA LAEESARLSA NQFATATTTT AAITPQISLF PFPTHQQQHF  240
TNPNTPLLPF TTISLTPWDL PQSHQNPNTN PTQNSPLHHL IKPESHRHFP PRPPQPQQPH  300
NGLITSPFQG LHVSTQPNSN PSTSSAHLSA TALLQKAAAV GAAAAQQGQS AGLTVGEFGT  360
ASHMISTEYL GGFTSGDVST WRKTDSLTRD FLGLNGDGTG NNNNNNNNVR AVHVKDMLPY  420
AGGVGFHQPP SERLGGLDSQ LKPQGFGFAE TTTASETWGD Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-112	C2H2 family protein