PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP022466.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 269aa    MW: 30540.3 Da    PI: 4.4971
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP022466.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS92.85.5e-29662672209
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++lL ++ ea++ g+ el + ++  l e ++p g +++Rla+y+ ++     ++      + l+  ++   + ++  aa++lf++++P+ +f+h +aN
  PCP022466.1  66 RHLLKAFGEAMEMGQRELEEVIMRCLVEKVNPLGHSLERLAFYLCQGVVDNQQG------DYLK--QE---SCKNFEAAFNLFYQIFPFGRFAHYAAN 152
                  7999999****************************************9988887......2222..22...356777899****************** PP

         GRAS 100 qaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                   aIleav ++ e+vH++ fdi++G+Q   L++a a+R++    l +T+++   ++       + + eet+++L++ A+++gv+++ + +   ++edl 
  PCP022466.1 153 TAILEAVPEDvETVHVVEFDIGEGVQLSQLIEAVAKRNKT---LEVTAIKWDVEEsdevapPQWRFEETKRQLQHHARSFGVNLKVEEI---EIEDL- 243
                  *******9999**************************765...99***9876555667899999***********************98...45555. PP

         GRAS 191 leeL.rvkp....gEalaVnlvlq 209
                  ++e+ +v++    +E la n++ +
  PCP022466.1 244 VSEIkKVNKrggrREFLAFNSMQE 267
                  233312222445589999998865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    
MYASRLEGSE GSNTLPSQQF SGEGNDVWSP NSFAISEASS MDVTSVQQSI TLPRDEMEID  60
NKVSIRHLLK AFGEAMEMGQ RELEEVIMRC LVEKVNPLGH SLERLAFYLC QGVVDNQQGD  120
YLKQESCKNF EAAFNLFYQI FPFGRFAHYA ANTAILEAVP EDVETVHVVE FDIGEGVQLS  180
QLIEAVAKRN KTLEVTAIKW DVEESDEVAP PQWRFEETKR QLQHHARSFG VNLKVEEIEI  240
EDLVSEIKKV NKRGGRREFL AFNSMQEVS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.14e-13GRAS family protein