PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP020980.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 547aa    MW: 61016.9 Da    PI: 6.0002
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP020980.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS310.92.8e-951745452374
         GRAS   2 velLlecAeavssgdlelaqalLarlsel......aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                  +e L+++A+++++++l+laq +L rl+++      + p g+p+qR+a yf+ AL++ l++     +++ + + ts+ + ++++ a++ fs +sP++ f
  PCP020980.1 174 IEELIRAADCFDTEELQLAQVILDRLNHRlrssspSKPVGKPLQRAAVYFKDALQSLLNG-----SDTAAREFTSWADIVQTIRAYNGFSGISPVPMF 266
                  679*************************9876433345679*******************.....55555555666679******************* PP

         GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp......eg...ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                  sh+t+Nqa+lea++g+  +H+iDfdi+ G+Q+++L+++La+++      +g   pp lRiT+v+++e   + e++ ++e+L++fA+el+++f+ +++ 
  PCP020980.1 267 SHFTTNQALLEALNGSAFIHVIDFDIGLGGQYASLMKELAEKAdvasrnNGnpvPPVLRITAVVPEE--YAVETRLIRENLSQFAQELKIRFQVEFVP 362
                  ****************************************9996655432277899*********66..9999***********************99 PP

         GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklpre 278
                   ++++++++++ ++  gE++aV l+  + r l+++ +++     +L  ++++sP vvv+v+ e   d +++sF + f++ le++s +++sl+a++++ 
  PCP020980.1 363 LRTFDMMSFKAVKFMDGEKTAVLLSPYILRRLSSQNNIS----GFLGNMRRVSPSVVVFVDGEgmGDAGTTSFRRNFISGLEFFSIMLESLDASVAAS 456
                  99************************9999995555555....5*******************6556699**************************** PP

         GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  s+  +k+E  ll+++i+  v ++g++          Wre ++ aG+++v+ls++a  qa++ll kv+++g++v +++++lvl+W+dr+Lv++SaWr
  PCP020980.1 457 SDVVKKIETYLLRPKIQATVEAAGRR-------IPPWREVFQGAGMRAVELSQFADFQAQCLLGKVQVRGFHVAKRQAELVLCWHDRALVVTSAWR 545
                  ************************98.......99************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    
MRVPVSSPLS NNDNQSPKHN PQSNNPSVNF HLGISSLGGY EPTSVLDLRQ SPSPVSAKKP  60
SKISAISNVL SHSNHDPLEW EDEQVLHNLD WDSMRDLGLH DDNVPNLKTS IPQLNANDPQ  120
ISEYPHPQQF DPTQLVHTDY DINLSEVYSS QNCYDHVTND FHQSGNWNVG LDFIEELIRA  180
ADCFDTEELQ LAQVILDRLN HRLRSSSPSK PVGKPLQRAA VYFKDALQSL LNGSDTAARE  240
FTSWADIVQT IRAYNGFSGI SPVPMFSHFT TNQALLEALN GSAFIHVIDF DIGLGGQYAS  300
LMKELAEKAD VASRNNGNPV PPVLRITAVV PEEYAVETRL IRENLSQFAQ ELKIRFQVEF  360
VPLRTFDMMS FKAVKFMDGE KTAVLLSPYI LRRLSSQNNI SGFLGNMRRV SPSVVVFVDG  420
EGMGDAGTTS FRRNFISGLE FFSIMLESLD ASVAASSDVV KKIETYLLRP KIQATVEAAG  480
RRIPPWREVF QGAGMRAVEL SQFADFQAQC LLGKVQVRGF HVAKRQAELV LCWHDRALVV  540
TSAWRCN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-160GRAS family protein