PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP020277.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Nin-like

Protein Properties

Length: 798aa MW: 88974.4 Da PI: 6.171

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP020277.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.7	5.7e-29	553	604	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCR++GI+RWP+Rkik++ PCP020277.1 553 AEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRHHGISRWPSRKIKKI 604 589***********************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 798 aa Download sequence
MSDPEDEIQT PSTPPNLKNE REDALMDFDF DLDVLCTLDP IHFLSYPTSP LLLPPNDQPC 60 TPLWAFSDGD VESDYKLAGH AGQALSDRSQ FVSCNSNSIT EGSTETKNNR MLPSPFSGLE 120 PLESSDGYSL VNEKITQALR YLKELTDHPV LAQFWAPVKD GNRYVLTTLG QPFVLDPQCI 180 RLHQYRMACL MYMFSVDGES DGVLGLPSRV FQHKLPEWTP NVQYYSIKEY ARLHHARQYN 240 VQGTLALPVF EPSGRSCVGV LELIMISPLI NYGPEVDKAV SLKSSEILDH PSRQIQICNE 300 GRQTALAEIL KILIVKSCTS FDGSCMEQVC MSTTDVAFYI VDAHMWHFRD ACIEHHLQKG 360 QGVAGRAFLS HNACFCEDIT QLCKTEYPLA HYARMFGLAG SFAICLQSTH TGNDDYILEF 420 FLPPSITDSH EQQTLLGSIL AIMKNHFRSL SVASGIVLEE EGMVEIVQAS KNNGLATRLQ 480 CILIPRSVES PPVPALPNRE EMVQLDSSKP QLVVGYDVVN DGRNYVHEGG ENNISFPENK 540 DIEKKPEKKH GKAEKSISLE VLQQYFAGSL KDAAKSLGVC PTTMKRICRH HGISRWPSRK 600 IKKINHSLTK IQHIIESVHG SPSSKSCEVD GQKKDSPTST SPGTEGRAGI DNHLLDGRML 660 SYEELLLEHN SPGNKIAMVN PPFSDSAPKQ SNTMPHITGR QEMKSVTIKT TYKEYIIRFH 720 VSMSSGIVDM KEEVAKKLKP EGGTFNIKCV AYDLEQVPVP CDADLQECLE VCRTSRINLI 780 RLSIHEIMSH LGSSCVRF

Sequence ? help Back to Top

Protein Sequence Length: 798 aa Download sequence

MSDPEDEIQT PSTPPNLKNE REDALMDFDF DLDVLCTLDP IHFLSYPTSP LLLPPNDQPC  60
TPLWAFSDGD VESDYKLAGH AGQALSDRSQ FVSCNSNSIT EGSTETKNNR MLPSPFSGLE  120
PLESSDGYSL VNEKITQALR YLKELTDHPV LAQFWAPVKD GNRYVLTTLG QPFVLDPQCI  180
RLHQYRMACL MYMFSVDGES DGVLGLPSRV FQHKLPEWTP NVQYYSIKEY ARLHHARQYN  240
VQGTLALPVF EPSGRSCVGV LELIMISPLI NYGPEVDKAV SLKSSEILDH PSRQIQICNE  300
GRQTALAEIL KILIVKSCTS FDGSCMEQVC MSTTDVAFYI VDAHMWHFRD ACIEHHLQKG  360
QGVAGRAFLS HNACFCEDIT QLCKTEYPLA HYARMFGLAG SFAICLQSTH TGNDDYILEF  420
FLPPSITDSH EQQTLLGSIL AIMKNHFRSL SVASGIVLEE EGMVEIVQAS KNNGLATRLQ  480
CILIPRSVES PPVPALPNRE EMVQLDSSKP QLVVGYDVVN DGRNYVHEGG ENNISFPENK  540
DIEKKPEKKH GKAEKSISLE VLQQYFAGSL KDAAKSLGVC PTTMKRICRH HGISRWPSRK  600
IKKINHSLTK IQHIIESVHG SPSSKSCEVD GQKKDSPTST SPGTEGRAGI DNHLLDGRML  660
SYEELLLEHN SPGNKIAMVN PPFSDSAPKQ SNTMPHITGR QEMKSVTIKT TYKEYIIRFH  720
VSMSSGIVDM KEEVAKKLKP EGGTFNIKCV AYDLEQVPVP CDADLQECLE VCRTSRINLI  780
RLSIHEIMSH LGSSCVRF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein