PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP019507.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB_related

Protein Properties

Length: 679aa MW: 74900.7 Da PI: 9.4123

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP019507.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.3	1.5e-07	581	630	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ PCP019507.1 581 RRPFSVTEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 630 678999******************9988889************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence
MVMQKRLDYG FNGYQVPVTP KASRSARKRR AVRKMVEDNA MGAFDLLATV AGKLLLEGES 60 SPASSHTSIG KDQCAGIKEN YLAGDKTLKA EPCDQGSSDR IPLVSEYKST GQNLSSCSKA 120 SPVHQNESHS VMTTSDCSER FVSDMLASGK CKNELGSLTG KIEAGYSGNR ESGECKLDNE 180 VKVLVKDETN KSGEVVTSTG PDMCSFQDPV VWEGEPPPLL SSDGSTKVPM YVDHIPQRSF 240 PASRDDVKLV GRDDDENFFG CTHPSTAMKY SRPAPSRIGD RRIRKILASK YWKVPKSKDE 300 THSNSYRDMK PNYHNRKNCY KRQRSQMNMP FKKRRLFDRS TVPNPDQGIS REGFFDLRGK 360 GTKGNASASC SKMQATGMSS SVGGQHSSFQ SRNSHVKLRI KSFRVPELFI EIPETATVGS 420 LKKTVMEAVT AVLGGGLCVG VLLQGKKVRD DNKTLLQTGI SQDDHLDSVG FSLEPDPSRT 480 PPPLCSDGSP SMLPCDDVKP LTRYQPGPTG ELLPEPHVAS FGSYIESDHD SAPSPTDMSA 540 EKSTTDSKAL VAVPDVSVDA LAVVPGNRKS RRFDIGQRRI RRPFSVTEVE ALVQAVEKLG 600 TGRWRDVKLR AFDNAKHRTY VDLKDKWKTL VHTARISPQQ RRGEPVPQEL LDRVLTAHAY 660 WSQQQAKQQL KQPETCLLV

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence

MVMQKRLDYG FNGYQVPVTP KASRSARKRR AVRKMVEDNA MGAFDLLATV AGKLLLEGES  60
SPASSHTSIG KDQCAGIKEN YLAGDKTLKA EPCDQGSSDR IPLVSEYKST GQNLSSCSKA  120
SPVHQNESHS VMTTSDCSER FVSDMLASGK CKNELGSLTG KIEAGYSGNR ESGECKLDNE  180
VKVLVKDETN KSGEVVTSTG PDMCSFQDPV VWEGEPPPLL SSDGSTKVPM YVDHIPQRSF  240
PASRDDVKLV GRDDDENFFG CTHPSTAMKY SRPAPSRIGD RRIRKILASK YWKVPKSKDE  300
THSNSYRDMK PNYHNRKNCY KRQRSQMNMP FKKRRLFDRS TVPNPDQGIS REGFFDLRGK  360
GTKGNASASC SKMQATGMSS SVGGQHSSFQ SRNSHVKLRI KSFRVPELFI EIPETATVGS  420
LKKTVMEAVT AVLGGGLCVG VLLQGKKVRD DNKTLLQTGI SQDDHLDSVG FSLEPDPSRT  480
PPPLCSDGSP SMLPCDDVKP LTRYQPGPTG ELLPEPHVAS FGSYIESDHD SAPSPTDMSA  540
EKSTTDSKAL VAVPDVSVDA LAVVPGNRKS RRFDIGQRRI RRPFSVTEVE ALVQAVEKLG  600
TGRWRDVKLR AFDNAKHRTY VDLKDKWKTL VHTARISPQQ RRGEPVPQEL LDRVLTAHAY  660
WSQQQAKQQL KQPETCLLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-134	MYB_related family protein