PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP018548.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 1103aa MW: 120049 Da PI: 5.3908

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP018548.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.9	3.6e-08	450	477	1	27
--S---SGGGGTS.--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHgp 27 +kt+lC+ff+r tC +G+ C++aHg+ PCP018548.1 450 WKTSLCSFFRREAkTCGHGSECRYAHGE 477 8********99***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 1103 aa Download sequence
MGNFGSTTSG GRRRHRPQPQ MSGGTHVFAA SPPPHASQYP NGPDSNPPQY RQYPSLYPNG 60 SNLNPPQFFQ YPGFHPPPPV PGPYPQSFHG TGVYMGPTPA NWVHGQFPFG APPPPPQGAP 120 FVEHQKTVTI KNDVNIKKDS LRVEPDEENP GRFVVAFTFD AAAPGSMTVM FFAKEDVDCK 180 LIATKEGLLK SVTVPFEKGL GQKFRQPSGT GIDFSVFEDI GLTKEGDVEV YPLVVKAESF 240 PLNDGERESD GNSAGNSQIT QAVFEKKENG EYKVRVMKQI LWVNGMRYEL QEIFGIGNSV 300 ENDQNGNDSG KECIICLSEP RDTTVLPCRH MCMCSGCAKV LRFQTNRCPV CRQPVDRLLE 360 IKTTPLLSHS KLADNSITFA MSSTPTPTAE PSATELLNPP SPLNGHGSTD QPQPPQDPAT 420 QPPDDVVSGD KRKREVNDDV QNPSAAPPLW KTSLCSFFRR EAKTCGHGSE CRYAHGEAEL 480 RPRPDNTWDP TSERAKKQKL EEEIEGCVAL DNVMMTEAID EDGDGGDAGG LDPELSKCLG 540 VGFKSAKKKK GMALGFVSFE NAEQLQNAVK DLEGISIGNK VMKVADVIPR SFEKRTKSIM 600 APQIPGVGLD GENVEDSMTA NGAEDGDGLT GRSARKVVTP LAHMSYDDQL EHKKSSLMQI 660 LKRLTRNARK ACPDGIPLPE WILKSREIGG LPCSLEGILA SPVVKGYRNK CEFSVGYSLQ 720 GKITVGFMLG NFREGVTAVE EPFDCPNVSR ISSQYASIFK EFLQHSSLPI WNRFKNIGFW 780 RQLTVREGRK PGIATDSEHC EANIMEVMLI VQVSSSGFDD AQITSEYERL AQAFAAGAAA 840 SSPSLPLMFL VIQDHQGISN AAPADAPLRS LSIPKAEGGS ETQSADNVVE PKIHDYINNL 900 KFCISPTAFF QVNTPAAEKL YSLAGDWAQL GPDTLLFDVC CGTGTIGLTL AHHVGMVVGI 960 EMNASAVSDA RRNSEINDIK NCRFVCAKAE DVMRSLLEEY AIAPQKQDDH VTEGSDKVIV 1020 TEGEKAISMD NKPNPEESSS HELDTASEGL EIDKQEVRSQ PQSSCTSEKG KTPVKCFSNV 1080 VAIVDPPRNG LHPTVSNTLV HSI

Sequence ? help Back to Top

Protein Sequence Length: 1103 aa Download sequence

MGNFGSTTSG GRRRHRPQPQ MSGGTHVFAA SPPPHASQYP NGPDSNPPQY RQYPSLYPNG  60
SNLNPPQFFQ YPGFHPPPPV PGPYPQSFHG TGVYMGPTPA NWVHGQFPFG APPPPPQGAP  120
FVEHQKTVTI KNDVNIKKDS LRVEPDEENP GRFVVAFTFD AAAPGSMTVM FFAKEDVDCK  180
LIATKEGLLK SVTVPFEKGL GQKFRQPSGT GIDFSVFEDI GLTKEGDVEV YPLVVKAESF  240
PLNDGERESD GNSAGNSQIT QAVFEKKENG EYKVRVMKQI LWVNGMRYEL QEIFGIGNSV  300
ENDQNGNDSG KECIICLSEP RDTTVLPCRH MCMCSGCAKV LRFQTNRCPV CRQPVDRLLE  360
IKTTPLLSHS KLADNSITFA MSSTPTPTAE PSATELLNPP SPLNGHGSTD QPQPPQDPAT  420
QPPDDVVSGD KRKREVNDDV QNPSAAPPLW KTSLCSFFRR EAKTCGHGSE CRYAHGEAEL  480
RPRPDNTWDP TSERAKKQKL EEEIEGCVAL DNVMMTEAID EDGDGGDAGG LDPELSKCLG  540
VGFKSAKKKK GMALGFVSFE NAEQLQNAVK DLEGISIGNK VMKVADVIPR SFEKRTKSIM  600
APQIPGVGLD GENVEDSMTA NGAEDGDGLT GRSARKVVTP LAHMSYDDQL EHKKSSLMQI  660
LKRLTRNARK ACPDGIPLPE WILKSREIGG LPCSLEGILA SPVVKGYRNK CEFSVGYSLQ  720
GKITVGFMLG NFREGVTAVE EPFDCPNVSR ISSQYASIFK EFLQHSSLPI WNRFKNIGFW  780
RQLTVREGRK PGIATDSEHC EANIMEVMLI VQVSSSGFDD AQITSEYERL AQAFAAGAAA  840
SSPSLPLMFL VIQDHQGISN AAPADAPLRS LSIPKAEGGS ETQSADNVVE PKIHDYINNL  900
KFCISPTAFF QVNTPAAEKL YSLAGDWAQL GPDTLLFDVC CGTGTIGLTL AHHVGMVVGI  960
EMNASAVSDA RRNSEINDIK NCRFVCAKAE DVMRSLLEEY AIAPQKQDDH VTEGSDKVIV  1020
TEGEKAISMD NKPNPEESSS HELDTASEGL EIDKQEVRSQ PQSSCTSEKG KTPVKCFSNV  1080
VAIVDPPRNG LHPTVSNTLV HSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28450.1	0.0	C3H family protein