PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP016937.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

ARF

Protein Properties

Length: 711aa MW: 78129.1 Da PI: 7.5147

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP016937.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.5	1.2e-23	114	215	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + +++ PCP016937.1 114 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVIARDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RAENGD 207 89**************************996555555..8********************************************..448899 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+v+++r+ PCP016937.1 208 LCVGIRRA 215 9**997 PP
2	Auxin_resp	116.9	1.8e-38	290	373	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++FevvY+Prast+eF+vk++ v++a++v+++ GmRfkmafetedss++++ +Gtv++v+ +dp+ WpnS+Wr+L+ PCP016937.1 290 AASMAANGQPFEVVYYPRASTPEFCVKASAVRAAMRVQWCSGMRFKMAFETEDSSRISWfMGTVSSVQVADPIPWPNSPWRLLQ 373 68899*****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 711 aa Download sequence
MKESGKSLDP QLWHACAGGM VHVPPVNSEV FYFPQGHAEH AQAGGGVDFF SASPRIPSLV 60 LCRVAAIKFM ADPETDEVFA KIRMNPIENN EAFAADDGCT EADGSENQEK PASFAKTLTQ 120 SDANNGGGFS VPRYCAETIF PRLDYSADPP VQTVIARDVH GEVWKFRHIY RGTPRRHLLT 180 TGWSTFVNQK KLVAGDSIVF LRAENGDLCV GIRRAKRGLD GGGENELTSG WNNSHSSGGG 240 SGGCVLPYGG FSVFLREEEN KMMRNGGGNL SPKGNMRGKG RVRPESVVEA ASMAANGQPF 300 EVVYYPRAST PEFCVKASAV RAAMRVQWCS GMRFKMAFET EDSSRISWFM GTVSSVQVAD 360 PIPWPNSPWR LLQVTWDEPD LLQNVKCVSP WLIELVSNFP MIQMSPFSPP RKKLRLPQHP 420 DFSLDGQLTL PSFSGNPFGP SSPLCCLPNN TPAGIQGARH AQFRISLSDL HLNNKLQSEL 480 FSSSFQRLNQ SSRISNGIRA GHTSSNENLS CLLTMGNSSQ NSEKTDNVKK HQFLLFGQPI 540 LTEQQITRSC SKDGNQDNTK VFFNGSESAP GRQFPLEKSS SVGFSWHKDF QATDLDLETG 600 HCKVFMESED VGRTLDLSAL SSYEELYRRL ANLFGIEKPE MMSHVLCRDV TGAVKQTGVE 660 PFSDFMKTAK RLTIITHPAS ESIGRTWIRG MQNAENGLGA TNKTGPLSIF A

Sequence ? help Back to Top

Protein Sequence Length: 711 aa Download sequence

MKESGKSLDP QLWHACAGGM VHVPPVNSEV FYFPQGHAEH AQAGGGVDFF SASPRIPSLV  60
LCRVAAIKFM ADPETDEVFA KIRMNPIENN EAFAADDGCT EADGSENQEK PASFAKTLTQ  120
SDANNGGGFS VPRYCAETIF PRLDYSADPP VQTVIARDVH GEVWKFRHIY RGTPRRHLLT  180
TGWSTFVNQK KLVAGDSIVF LRAENGDLCV GIRRAKRGLD GGGENELTSG WNNSHSSGGG  240
SGGCVLPYGG FSVFLREEEN KMMRNGGGNL SPKGNMRGKG RVRPESVVEA ASMAANGQPF  300
EVVYYPRAST PEFCVKASAV RAAMRVQWCS GMRFKMAFET EDSSRISWFM GTVSSVQVAD  360
PIPWPNSPWR LLQVTWDEPD LLQNVKCVSP WLIELVSNFP MIQMSPFSPP RKKLRLPQHP  420
DFSLDGQLTL PSFSGNPFGP SSPLCCLPNN TPAGIQGARH AQFRISLSDL HLNNKLQSEL  480
FSSSFQRLNQ SSRISNGIRA GHTSSNENLS CLLTMGNSSQ NSEKTDNVKK HQFLLFGQPI  540
LTEQQITRSC SKDGNQDNTK VFFNGSESAP GRQFPLEKSS SVGFSWHKDF QATDLDLETG  600
HCKVFMESED VGRTLDLSAL SSYEELYRRL ANLFGIEKPE MMSHVLCRDV TGAVKQTGVE  660
PFSDFMKTAK RLTIITHPAS ESIGRTWIRG MQNAENGLGA TNKTGPLSIF A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28350.1	0.0	ARF family protein