PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP016856.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 1191aa MW: 133074 Da PI: 7.3509

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP016856.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7.3e-05	501	523	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PCP016856.1 501 FVCEICKKGFQRDQNLQLHRRGH 523 89******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 1191 aa Download sequence
MQFLSKHNEQ VRKVVFENAP KNLKYTSSDI QKDLVRACAI ETIDAITKDM ECAFFSILVD 60 GSLDSSTKEQ MVVVLRYVNK KGEAIEKFLG VQHVTFTTSS SLEEAIKRFF ATTNLSMSKL 120 RGQDYDGASN MKAMVEVLEW IKDDTNQDNF GEARITNELS QALQKKDQDI VNAMALVEVC 180 KQRLQSLRDD DFGDLLDDVQ KFCEDHDIVV PNMEDLHFVP GKSRRKAQRL INFHYYRVDL 240 YFQVLDTQLK ELNDRFDEVN TETELLLWMT CLSPVHNFAS FDKAKIVRLA QLYPQDFDHM 300 DLINLPNQLD NYIHDMKMHS EFSSLRGIGD LAKELVKTGR CASYMLVYKL IALTLVLPVA 360 TALVERAFSA IKIVKTPLLN KMGDKWLSDS IFVYIERDVF AFIDNEPIMQ RSAATGSFSS 420 GNTGGEEVQQ QQQELLNHHA NFHGSNSFLP TTNIDSNGIS TAQVQKQPPP AKKKRNLPGT 480 PDPSAEVIAL SPKTLMATNR FVCEICKKGF QRDQNLQLHR RGHNLPWKLK QRTSTEIIKR 540 VYVCPEPSCV HHGPSRALGD LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG 600 TRQYKCDCGT IFSRRDSFIT HRAFCDTIAE ENNARNQGVV LMSNNTMGAP NLQQGQLSNS 660 ELIIPTSMPM NNNKITDNPP SARSDITTSG QFHHIFDAKN TPLTLETQRP FPIPAKPLNM 720 SPRSLNNNTS SSSPSPSSLL FELNHGRHSQ SLIPSSSGHL SATQLLQKAA QMGATLSGGP 780 NPNPGSTTIT SMAPSTYGTT TGGYNMNHFM QQRDHNIPQL ETSPQFFSAN CAEMGMFNVV 840 FDHHQNNGFL KNMEHENNGT PNKIGLRGAS NVGSGDTLTV DFLGLGGSGD INRPENFHDQ 900 QKQQHGQQDQ LGFGEFDDDD HLIMQRDLRE VTITRAERPP ADQFASLQSG FRRRLLLGLG 960 TASVVALGAD FLGVTSFLLG LSPESSRSLK LDVVYPIGGY SRCIDTNEGF EFIYPASWVG 1020 DQTLLYRAAE KKEFERSLDP PPLNFNTKSR TDGRRRNVSE PVVAFGPPAT TGELNVSVIV 1080 SPVALDFKIE AFGGPKEVGE AVVRTVTGSG KRPDIKGTLI ESKLREDSAS NVKYYELEFR 1140 VESPLFHRHN IAVCCVRGGR LFTLNAQAPE SAWPDVKSDF HRIAESFSLT S

Sequence ? help Back to Top

Protein Sequence Length: 1191 aa Download sequence

MQFLSKHNEQ VRKVVFENAP KNLKYTSSDI QKDLVRACAI ETIDAITKDM ECAFFSILVD  60
GSLDSSTKEQ MVVVLRYVNK KGEAIEKFLG VQHVTFTTSS SLEEAIKRFF ATTNLSMSKL  120
RGQDYDGASN MKAMVEVLEW IKDDTNQDNF GEARITNELS QALQKKDQDI VNAMALVEVC  180
KQRLQSLRDD DFGDLLDDVQ KFCEDHDIVV PNMEDLHFVP GKSRRKAQRL INFHYYRVDL  240
YFQVLDTQLK ELNDRFDEVN TETELLLWMT CLSPVHNFAS FDKAKIVRLA QLYPQDFDHM  300
DLINLPNQLD NYIHDMKMHS EFSSLRGIGD LAKELVKTGR CASYMLVYKL IALTLVLPVA  360
TALVERAFSA IKIVKTPLLN KMGDKWLSDS IFVYIERDVF AFIDNEPIMQ RSAATGSFSS  420
GNTGGEEVQQ QQQELLNHHA NFHGSNSFLP TTNIDSNGIS TAQVQKQPPP AKKKRNLPGT  480
PDPSAEVIAL SPKTLMATNR FVCEICKKGF QRDQNLQLHR RGHNLPWKLK QRTSTEIIKR  540
VYVCPEPSCV HHGPSRALGD LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG  600
TRQYKCDCGT IFSRRDSFIT HRAFCDTIAE ENNARNQGVV LMSNNTMGAP NLQQGQLSNS  660
ELIIPTSMPM NNNKITDNPP SARSDITTSG QFHHIFDAKN TPLTLETQRP FPIPAKPLNM  720
SPRSLNNNTS SSSPSPSSLL FELNHGRHSQ SLIPSSSGHL SATQLLQKAA QMGATLSGGP  780
NPNPGSTTIT SMAPSTYGTT TGGYNMNHFM QQRDHNIPQL ETSPQFFSAN CAEMGMFNVV  840
FDHHQNNGFL KNMEHENNGT PNKIGLRGAS NVGSGDTLTV DFLGLGGSGD INRPENFHDQ  900
QKQQHGQQDQ LGFGEFDDDD HLIMQRDLRE VTITRAERPP ADQFASLQSG FRRRLLLGLG  960
TASVVALGAD FLGVTSFLLG LSPESSRSLK LDVVYPIGGY SRCIDTNEGF EFIYPASWVG  1020
DQTLLYRAAE KKEFERSLDP PPLNFNTKSR TDGRRRNVSE PVVAFGPPAT TGELNVSVIV  1080
SPVALDFKIE AFGGPKEVGE AVVRTVTGSG KRPDIKGTLI ESKLREDSAS NVKYYELEFR  1140
VESPLFHRHN IAVCCVRGGR LFTLNAQAPE SAWPDVKSDF HRIAESFSLT S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	8e-90	C2H2 family protein