PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP016515.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family BBR-BPC
Protein Properties Length: 313aa    MW: 34583.9 Da    PI: 9.8063
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP016515.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind341.81.6e-104353131301
    GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllall 85 
                  mddd+ + rn+gyyep+  +k +l+lqlmss+aerd+k+    r+  + + + ++a+++rd         m++ +r++++++        ++k+l+++
  PCP016515.1  35 MDDDALNMRNWGYYEPS--FKGHLSLQLMSSMAERDTKPfvpgRDPTV-MVSANGAYHPRDcvvsdaqlpMSY-MRESWVNQ--------RDKFLNMM 120
                  9***9999*******99..**********************9999999.999*********999999999999.88899988........78999*99 PP

    GAGA_bind  86 lvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesa 183
                  +       a+p++  vl++t+ ++slq      l+++    r+e+      i e++ + ke+ ++kkrq +  pk++k kk++k      k+++++s+
  PCP016515.1 121 P-------ANPNYAAVLPETSGAHSLQI-----LQPPEPS-RDER---LGRI-EEPVVPKEVGTSKKRQGGGAPKAPKVKKPRKA-----KDNTNPSV 196
                  9.......468899**********9999.....4444433.3332...2223.34666778888888999999999999999982.....23334443 PP

    GAGA_bind 184 derskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsn 281
                   +r+k  kks+d+v+ng+++D+s++P+P+CsCtG+++qCY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRiagrKmSqgafkk+LekLaaeGy++ n
  PCP016515.1 197 -PRVKPAKKSLDVVINGINMDISGIPIPICSCTGVPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFTN 293
                  .799********************************************************************************************** PP

    GAGA_bind 282 pvDLkdhWAkHGtnkfvtir 301
                  p+DL+ hWAkHGtnkfvt+r
  PCP016515.1 294 PIDLRYHWAKHGTNKFVTLR 313
                  ******************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MASEGYPMVR FIAVHAVSLE GLNDVCLSAD SVALMDDDAL NMRNWGYYEP SFKGHLSLQL  60
MSSMAERDTK PFVPGRDPTV MVSANGAYHP RDCVVSDAQL PMSYMRESWV NQRDKFLNMM  120
PANPNYAAVL PETSGAHSLQ ILQPPEPSRD ERLGRIEEPV VPKEVGTSKK RQGGGAPKAP  180
KVKKPRKAKD NTNPSVPRVK PAKKSLDVVI NGINMDISGI PIPICSCTGV PQQCYRWGCG  240
GWQSACCTTN VSMYPLPMST KRRGARIAGR KMSQGAFKKV LEKLAAEGYN FTNPIDLRYH  300
WAKHGTNKFV TLR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.11e-113BBR-BPC family protein