PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP016503.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 627aa MW: 67247.9 Da PI: 8.9618

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP016503.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.3e-05	92	114	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H PCP016503.1 92 FICEVCNKGFQREQNLQLHRRGH 114 89*******************88 PP
2	zf-C2H2	13	0.0003	168	190	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ PCP016503.1 168 WKCEKCSKRYAVQSDWKAHSKTC 190 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 627 aa Download sequence
MAASSSSGAP LFGIREEDQN QQMRQQHSST TPTSSIAAPA APPQKKKRNQ PGTPSNYELS 60 NLLWFGIFHE RTDPEAEVVA LSPKTLMATN RFICEVCNKG FQREQNLQLH RRGHNLPWKL 120 KQKTTKEPKR KVYLCPEPTC VHHDPSRALG DLTGIKKHYF RKHGEKKWKC EKCSKRYAVQ 180 SDWKAHSKTC GTREYRCDCG TLFSRRDSFI THRAFCDALA QESARHPPSL TTIGSSLYGG 240 GSLSNTGLGL SHQVVGPPHQ LSSLDHSNQP SDILRLGGSS GAAAADRAGQ FDHLLSSPSM 300 GSSFRPAQSS AASFFMTGAS DHDQSNQQQY HDQDKSFHGL MQFTHHSPHQ HHSGAGTNLF 360 NLPFVSNSNT NSTNSNSANN SNSLISPNHF NTNANGSASA TGGGNEVSNN LFAGHIMGGG 420 DHMSSGVPSL YSNNGNSQQQ AMSSHMSATA LLQKAAQMGS NTSNNNNTTS LLRSFGSSSL 480 TTTKPDRPGT LVPSSLGRMF GSDQTDQSHL QDLMNSFASG GGGSSIFGNA AFGGYDASAN 540 RAINMEDAKL QQQQHIGLNN IGGGSDRLTR DFLGVGQVVR SMSGGFSHQR SEQQHGGMEM 600 LSSLDSESNA AAAAPSTQSF GGGGNFQ

Sequence ? help Back to Top

Protein Sequence Length: 627 aa Download sequence

MAASSSSGAP LFGIREEDQN QQMRQQHSST TPTSSIAAPA APPQKKKRNQ PGTPSNYELS  60
NLLWFGIFHE RTDPEAEVVA LSPKTLMATN RFICEVCNKG FQREQNLQLH RRGHNLPWKL  120
KQKTTKEPKR KVYLCPEPTC VHHDPSRALG DLTGIKKHYF RKHGEKKWKC EKCSKRYAVQ  180
SDWKAHSKTC GTREYRCDCG TLFSRRDSFI THRAFCDALA QESARHPPSL TTIGSSLYGG  240
GSLSNTGLGL SHQVVGPPHQ LSSLDHSNQP SDILRLGGSS GAAAADRAGQ FDHLLSSPSM  300
GSSFRPAQSS AASFFMTGAS DHDQSNQQQY HDQDKSFHGL MQFTHHSPHQ HHSGAGTNLF  360
NLPFVSNSNT NSTNSNSANN SNSLISPNHF NTNANGSASA TGGGNEVSNN LFAGHIMGGG  420
DHMSSGVPSL YSNNGNSQQQ AMSSHMSATA LLQKAAQMGS NTSNNNNTTS LLRSFGSSSL  480
TTTKPDRPGT LVPSSLGRMF GSDQTDQSHL QDLMNSFASG GGGSSIFGNA AFGGYDASAN  540
RAINMEDAKL QQQQHIGLNN IGGGSDRLTR DFLGVGQVVR SMSGGFSHQR SEQQHGGMEM  600
LSSLDSESNA AAAAPSTQSF GGGGNFQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-119	C2H2 family protein